CsaV3_7G030500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G030500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 19296482 .. 19296933 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGGTTTCGCTTTTGTATGTATATATATTTTATTATAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGGTATGAATCGGTTTCTTCTCATTTTTACTAGCTACCTGTTGAATTGCTGATGCTTTCTCTCTTTAAATGTTAAAGAACATGCATGATTTTGATGTGCAGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

mRNA sequence

ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

Coding sequence (CDS)

ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

Protein sequence

MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERERPVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF
Homology
[Close]
BLAST of CsaV3_7G030500 vs. NCBI nr
Match: KGN45070.1 (hypothetical protein Csa_7G420150 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX 60
           MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX
Sbjct: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX 60

Query: 61  XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 106
           XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF
Sbjct: 61  XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 105

[Close]
BLAST of CsaV3_7G030500 vs. TrEMBL
Match: tr|A0A0A0K5X5|A0A0A0K5X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420150 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.2e-39
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX 60
           MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX
Sbjct: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSXXXXXXXXXXXXXXX 60

Query: 61  XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 106
           XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF
Sbjct: 61  XVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 105

The following BLAST results are available for this feature:
BLAST of CsaV3_7G030500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45070.11.4e-38100.00hypothetical protein Csa_7G420150 [Cucumis sativus][more]
BLAST of CsaV3_7G030500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G030500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G030500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5X5|A0A0A0K5X5_CUCSA9.2e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420150 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G030500.1CsaV3_7G030500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G030500CSPI07G18680Wild cucumber (PI 183967)cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G030500Watermelon (97103) v2cucwmbB536
CsaV3_7G030500Watermelon (97103) v2cucwmbB594
CsaV3_7G030500Wax gourdcucwgoB672
CsaV3_7G030500Wax gourdcucwgoB730
CsaV3_7G030500Silver-seed gourdcarcucB0128
CsaV3_7G030500Silver-seed gourdcarcucB0486
CsaV3_7G030500Silver-seed gourdcarcucB0804
CsaV3_7G030500Silver-seed gourdcarcucB0858
CsaV3_7G030500Cucumber (Gy14) v2cgybcucB347
CsaV3_7G030500Cucumber (Gy14) v1cgycucB181
CsaV3_7G030500Cucurbita maxima (Rimu)cmacucB0317
CsaV3_7G030500Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G030500Cucurbita maxima (Rimu)cmacucB0595
CsaV3_7G030500Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G030500Cucurbita moschata (Rifu)cmocucB0312
CsaV3_7G030500Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G030500Cucurbita moschata (Rifu)cmocucB0582
CsaV3_7G030500Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G030500Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G030500Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G030500Cucurbita pepo (Zucchini)cpecucB0726
CsaV3_7G030500Cucurbita pepo (Zucchini)cpecucB0789
CsaV3_7G030500Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G030500Bottle gourd (USVL1VR-Ls)cuclsiB550
CsaV3_7G030500Melon (DHL92) v3.5.1cucmeB537
CsaV3_7G030500Melon (DHL92) v3.6.1cucmedB525
CsaV3_7G030500Watermelon (Charleston Gray)cucwcgB548
CsaV3_7G030500Watermelon (Charleston Gray)cucwcgB555
CsaV3_7G030500Watermelon (97103) v1cucwmB593
CsaV3_7G030500Watermelon (97103) v1cucwmB601