CsaV3_7G029740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 18805732 .. 18806119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGAACGGATTTGGGAGAAGCAGAGGGGGGAGAGTAATAATAGTAAGGAAAATACGGTAAAATTGGGTTCGGCGGAGGCGGAGCAATGCCTGGAAATTGGCCACCGCCGGACGGAGGGTACGGCTGGACAGAGGATGGCGGCGGAGGGGAAGGGTAGACGCATGCATCGCACGAGGGAGGCGAGGGTGGAGGAGGGCATTGAGAAGTGGGGAGTGGCGGTGGGGGAGATGGAGGCGGAGAGGGACGGGGGCGGGGGAGGGCATTCGACAACCGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTGGCGGAAGAAAGGAGGGAGAATTTGGTGA

mRNA sequence

AATTGGGTTCGGCGGAGGCGGAGCAATGCCTGGAAATTGGCCACCGCCGGACGGAGGGTACGGCTGGACAGAGGATGGCGGCGGAGGGGAAGGGTAGACGCATGCATCGCACGAGGGAGGCGAGGGTGGAGGAGGGCATTGAGAAGTGGGGAGTGGCGGTGGGGGAGATGGAGGCGGAGAGGGACGGGGGCGGGGGAGGGCATTCGACAACCGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTGGCGGAAGAAAGGAGGGAGAATTTGGTG

Coding sequence (CDS)

AATTGGGTTCGGCGGAGGCGGAGCAATGCCTGGAAATTGGCCACCGCCGGACGGAGGGTACGGCTGGACAGAGGATGGCGGCGGAGGGGAAGGGTAGACGCATGCATCGCACGAGGGAGGCGAGGGTGGAGGAGGGCATTGAGAAGTGGGGAGTGGCGGTGGGGGAGATGGAGGCGGAGAGGGACGGGGGCGGGGGAGGGCATTCGACAACCGGCGGCGGCGGCGGGAGTTGACATGGGTTGTCACAAGTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTGGCGGAAGAAAGGAGGGAGAATTTGGTG

Protein sequence

NWVRRRRSNAWKLATAGRRVRLDRGWRRRGRVDACIARGRRGWRRALRSGEWRWGRWRRRGTGAGEGIRQPAAAAGVDMGCHKLSTWNSRPDPWPRRWRKKGGRIWX
Homology
[Close]
BLAST of CsaV3_7G029740 vs. NCBI nr
Match: KGN44991.1 (hypothetical protein Csa_7G405960 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 60/147 (40.82%), Postives = 67/147 (45.58%), Query Frame = 0 

Query: 7   RSNAWKLATAGRRVRLDRGWRR----RGRVDACIARGRRGWR---RALRSGEWRW----G 66
           + N  KL +A     L+ G RR     G+  A   +GRR  R     +  G  +W    G
Sbjct: 18  KENTVKLGSAEAEQCLEIGHRRTEGTAGQRMAAEGKGRRMHRTREARVEEGIEKWGVAVG 77

Query: 67  RWRRRGTGAGEGIRQPAAA------------------------------------AGVDM 107
                GTGAGEGIRQPAAA                                       DM
Sbjct: 78  EMEAEGTGAGEGIRQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDM 137

[Close]
BLAST of CsaV3_7G029740 vs. TrEMBL
Match: tr|A0A0A0KB51|A0A0A0KB51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 60/147 (40.82%), Postives = 67/147 (45.58%), Query Frame = 0 

Query: 7   RSNAWKLATAGRRVRLDRGWRR----RGRVDACIARGRRGWR---RALRSGEWRW----G 66
           + N  KL +A     L+ G RR     G+  A   +GRR  R     +  G  +W    G
Sbjct: 18  KENTVKLGSAEAEQCLEIGHRRTEGTAGQRMAAEGKGRRMHRTREARVEEGIEKWGVAVG 77

Query: 67  RWRRRGTGAGEGIRQPAAA------------------------------------AGVDM 107
                GTGAGEGIRQPAAA                                       DM
Sbjct: 78  EMEAEGTGAGEGIRQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDM 137

The following BLAST results are available for this feature:
BLAST of CsaV3_7G029740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44991.16.6e-1240.82hypothetical protein Csa_7G405960 [Cucumis sativus][more]
BLAST of CsaV3_7G029740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KB51|A0A0A0KB51_CUCSA4.3e-1240.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G029740.1CsaV3_7G029740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G029740CSPI07G17920Wild cucumber (PI 183967)cpicucB414
CsaV3_7G029740CsGy7G016380Cucumber (Gy14) v2cgybcucB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G029740Cucumber (Chinese Long) v3cuccucB185
CsaV3_7G029740Silver-seed gourdcarcucB0128
CsaV3_7G029740Silver-seed gourdcarcucB0601
CsaV3_7G029740Silver-seed gourdcarcucB0804
CsaV3_7G029740Silver-seed gourdcarcucB0858
CsaV3_7G029740Cucumber (Gy14) v2cgybcucB195
CsaV3_7G029740Cucumber (Gy14) v1cgycucB108
CsaV3_7G029740Cucumber (Gy14) v1cgycucB330
CsaV3_7G029740Cucurbita maxima (Rimu)cmacucB0317
CsaV3_7G029740Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G029740Cucurbita maxima (Rimu)cmacucB0595
CsaV3_7G029740Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G029740Cucurbita moschata (Rifu)cmocucB0312
CsaV3_7G029740Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G029740Cucurbita moschata (Rifu)cmocucB0582
CsaV3_7G029740Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G029740Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G029740Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G029740Cucurbita pepo (Zucchini)cpecucB0730
CsaV3_7G029740Wild cucumber (PI 183967)cpicucB246
CsaV3_7G029740Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G029740Bottle gourd (USVL1VR-Ls)cuclsiB550
CsaV3_7G029740Melon (DHL92) v3.5.1cucmeB550
CsaV3_7G029740Melon (DHL92) v3.5.1cucmeB584
CsaV3_7G029740Melon (DHL92) v3.6.1cucmedB538
CsaV3_7G029740Melon (DHL92) v3.6.1cucmedB571
CsaV3_7G029740Watermelon (Charleston Gray)cucwcgB548
CsaV3_7G029740Watermelon (Charleston Gray)cucwcgB555
CsaV3_7G029740Watermelon (Charleston Gray)cucwcgB593
CsaV3_7G029740Watermelon (97103) v1cucwmB593
CsaV3_7G029740Watermelon (97103) v1cucwmB601
CsaV3_7G029740Watermelon (97103) v2cucwmbB536
CsaV3_7G029740Watermelon (97103) v2cucwmbB594
CsaV3_7G029740Wax gourdcucwgoB672
CsaV3_7G029740Wax gourdcucwgoB716