CsaV3_7G029690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G029690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 18778083 .. 18778560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

mRNA sequence

ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

Coding sequence (CDS)

ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

Protein sequence

MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCTX

Homology

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BLAST of CsaV3_7G029690 vs. NCBI nr
Match: KGN44987.1 (hypothetical protein Csa_7G405930 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 9.1e-50
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX 60
           MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX
Sbjct: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK 120

Query: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT
Sbjct: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 159

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BLAST of CsaV3_7G029690 vs. NCBI nr
Match: XP_016901048.1 (PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 73/157 (46.50%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXXX 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH V    S                 
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXSG---------------- 61

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPKAS 122
                                                     +++ RRVGRK SSKPKAS
Sbjct: 62  -----------------------------------------INLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

[Close]

BLAST of CsaV3_7G029690 vs. TrEMBL
Match: tr|A0A0A0K9E6|A0A0A0K9E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.0e-50
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX 60
           MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX
Sbjct: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPK 120

Query: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT
Sbjct: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 159

[Close]

BLAST of CsaV3_7G029690 vs. TrEMBL
Match: tr|A0A1S4DYK0|A0A1S4DYK0_CUCME (uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 73/157 (46.50%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXXX 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH V    S                 
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXSG---------------- 61

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVGRKGSSKPKAS 122
                                                     +++ RRVGRK SSKPKAS
Sbjct: 62  -----------------------------------------INLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44987.1	9.1e-50	100.00	hypothetical protein Csa_7G405930 [Cucumis sativus]	[more]
XP_016901048.1	8.3e-27	46.50	PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo]	[more]

BLAST of CsaV3_7G029690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G029690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G029690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9E6\|A0A0A0K9E6_CUCSA	6.0e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1	[more]
tr\|A0A1S4DYK0\|A0A1S4DYK0_CUCME	5.5e-27	46.50	uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G029690.1	CsaV3_7G029690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..131
None	No IPR available	SUPERFAMILY	SSF69349	Phage fibre proteins	coord: 35..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G029690	CSPI07G17890	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G029690	CsGy7G016350	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G029690	Cla015112	Watermelon (97103) v1	cucwmB593
CsaV3_7G029690	MELO3C015950	Melon (DHL92) v3.5.1	cucmeB550
CsaV3_7G029690	ClCG09G005380	Watermelon (Charleston Gray)	cucwcgB548
CsaV3_7G029690	Lsi02G024440	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G029690	MELO3C015950.2	Melon (DHL92) v3.6.1	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G029690	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G029690	Cucurbita moschata (Rifu)	cmocucB0312
CsaV3_7G029690	Cucurbita moschata (Rifu)	cmocucB0455
CsaV3_7G029690	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G029690	Cucurbita pepo (Zucchini)	cpecucB0188
CsaV3_7G029690	Cucurbita pepo (Zucchini)	cpecucB0422
CsaV3_7G029690	Wild cucumber (PI 183967)	cpicucB246
CsaV3_7G029690	Bottle gourd (USVL1VR-Ls)	cuclsiB550
CsaV3_7G029690	Melon (DHL92) v3.5.1	cucmeB584
CsaV3_7G029690	Melon (DHL92) v3.6.1	cucmedB571
CsaV3_7G029690	Watermelon (Charleston Gray)	cucwcgB555
CsaV3_7G029690	Watermelon (Charleston Gray)	cucwcgB593
CsaV3_7G029690	Watermelon (97103) v1	cucwmB601
CsaV3_7G029690	Watermelon (97103) v2	cucwmbB536
CsaV3_7G029690	Watermelon (97103) v2	cucwmbB594
CsaV3_7G029690	Wax gourd	cucwgoB672
CsaV3_7G029690	Wax gourd	cucwgoB716
CsaV3_7G029690	Cucumber (Chinese Long) v3	cuccucB185
CsaV3_7G029690	Silver-seed gourd	carcucB0128
CsaV3_7G029690	Silver-seed gourd	carcucB0601
CsaV3_7G029690	Silver-seed gourd	carcucB0858
CsaV3_7G029690	Cucumber (Gy14) v2	cgybcucB195
CsaV3_7G029690	Cucumber (Gy14) v1	cgycucB108
CsaV3_7G029690	Cucumber (Gy14) v1	cgycucB330
CsaV3_7G029690	Cucurbita maxima (Rimu)	cmacucB0462