CsaV3_7G027720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G027720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At1g63330-like isoform X3
Locationchr7 : 17314741 .. 17316597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCAAGACCCTCCTCCCTTCCCCTTCTTTCAAACCTAACCTCTCCCCTCTATCTACTCACTCTTCCACTATTCCATCTTCGATTCCCCAAACTTCCTCTACTCATCATCCTAATCCTATATTACCTGCTGCTTTCAATCGCGAAGAGATTTCGTTTCATCACCCTCTTTCATTGTTCCTCCGCAATTGCAAGACAGGTAACATTACTGCAATTCAAGCATTTCATTTCTTTGACCTAATGATGCGTTCACATCCTATCCCCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCTAAGATTAACCATTACTCCCAACTATTTTCTCTCTATAATGAAATGCGCCTTGCTGGACTTTCCCCTGATCTCTTCACGCTAAGTATATTGGCGAATTGCCTTTGTAATGTCAATCGGGTTAGCGAAGCTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGTTATATTCCCAATGTAGTCACATATACGACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCCACCCGGTTATTTCTGAGAATGCAAAAATTAGGTTGTACGCCGAATGCGGTTACTTATGGGACTTTGATAAAGGGGCTATGCCAAACCGGGAATGTTAACATTGCACTTAAGTTGCATAAAGAAATGCTCAATGACGCTAGTCAATATGGGGTTAATTGTAAACCTGGTGTTATTACCTATAGTATCATCATAGATGGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACTTTTTGAGGAAATGAAAGCTCAGGGAATGATTCCCGATGTCATTTCATATAGCACCTTGATTCATGGATTTTGTTGTGCTGGAAAGTGGGATCAGTCTAAACATTTGTTCGATGAGATGGTGGATCAAGGTGTTCAACCAGATATGGTCACATTTAGTGTGTTGATTGATACGCTTTGCAAGGAAGGAAAGGTCACTGAGGCTAAGAAGTTGCTTGAGGTCATGATTCAGAGAGGTATCGTTCCTAATTTGATTACTTATAATTCACTGATTGATGGGTTTTGTATGGTTGGTGATTTGAATAGTGCCAGAGAACTGTTCCTTAGTATGCCAAGCAAAGGATTAGAACCTGATGAGATTAGCTACACTACACTTATTAACGGGTATTGTAAAACTTGGAAGGTGAAAGAAGCAATGAACCTTTACAATGAAATGCTTCAAGTGGGAAAGAGACCAAATGTGACAACATATGGTACCTTGTTAAAAGGACTTTTTCAGAAAGGCAAGGTTGGTGATGCAAAGAAGCTATTTGGTGTCATGAAAACTTATGGTGTTTCGGCAAATTCTCAAATATATGGTATTTTCTTAGATGGGCTGTGTAAGAATGATTGTTTATTTGAAGCAATGGAACTTTTTAATGAGCTCAAATCATACAACTTCAAATTGAACATCGAAAACTACAGTTGTCTAATTGATGGCCTATGTAAAGCAGGAAAACTTGAGACTGCGTGGGAGCTTTTTGAAAAACTATCCCAAGAAGGGCTTCAACCAGATGTTGTCACTTATAACATTATGATCCATGGGTTTTGTAAAGTGGGACAAGTAGATAATGCAAATATTTTGTTTGAAAAGATGGAAGAAAATGGTTGTACTCCTGACATAATTGCTTATAATACCCTTCTTTGTGGTTTCTGCGAAGGTAATAAATTAGAGGAGGTGATTAAACTTCTCCATAAGATGGTTCAAAAGGACGTGTCACCAAATGCTGCCAGTTGCACCATAGTCGTTGACATGCTCTGTAAAGATGAAAAATATAAAAAATTTGTAGACTTGCTTCCAAAATTTCCAGTCCAAAGGCATTGA

mRNA sequence

ATGCCTTCCAAGACCCTCCTCCCTTCCCCTTCTTTCAAACCTAACCTCTCCCCTCTATCTACTCACTCTTCCACTATTCCATCTTCGATTCCCCAAACTTCCTCTACTCATCATCCTAATCCTATATTACCTGCTGCTTTCAATCGCGAAGAGATTTCGTTTCATCACCCTCTTTCATTGTTCCTCCGCAATTGCAAGACAGGTAACATTACTGCAATTCAAGCATTTCATTTCTTTGACCTAATGATGCGTTCACATCCTATCCCCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCTAAGATTAACCATTACTCCCAACTATTTTCTCTCTATAATGAAATGCGCCTTGCTGGACTTTCCCCTGATCTCTTCACGCTAAGTATATTGGCGAATTGCCTTTGTAATGTCAATCGGGTTAGCGAAGCTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGTTATATTCCCAATGTAGTCACATATACGACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCCACCCGGTTATTTCTGAGAATGCAAAAATTAGGTTGTACGCCGAATGCGGTTACTTATGGGACTTTGATAAAGGGGCTATGCCAAACCGGGAATGTTAACATTGCACTTAAGTTGCATAAAGAAATGCTCAATGACGCTAGTCAATATGGGGTTAATTGTAAACCTGGTGTTATTACCTATAGTATCATCATAGATGGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACTTTTTGAGGAAATGAAAGCTCAGGGAATGATTCCCGATGTCATTTCATATAGCACCTTGATTCATGGATTTTGTTGTGCTGGAAAGTGGGATCAGTCTAAACATTTGTTCGATGAGATGGTGGATCAAGGTGTTCAACCAGATATGGTCACATTTAGTGTGTTGATTGATACGCTTTGCAAGGAAGGAAAGGTCACTGAGGCTAAGAAGTTGCTTGAGGTCATGATTCAGAGAGGTATCGTTCCTAATTTGATTACTTATAATTCACTGATTGATGGGTTTTGTATGGTTGGTGATTTGAATAGTGCCAGAGAACTGTTCCTTAGTATGCCAAGCAAAGGATTAGAACCTGATGAGATTAGCTACACTACACTTATTAACGGGTATTGTAAAACTTGGAAGGTGAAAGAAGCAATGAACCTTTACAATGAAATGCTTCAAGTGGGAAAGAGACCAAATGTGACAACATATGGTACCTTGTTAAAAGGACTTTTTCAGAAAGGCAAGGTTGGTGATGCAAAGAAGCTATTTGGTGTCATGAAAACTTATGGTGTTTCGGCAAATTCTCAAATATATGGTATTTTCTTAGATGGGCTGTGTAAGAATGATTGTTTATTTGAAGCAATGGAACTTTTTAATGAGCTCAAATCATACAACTTCAAATTGAACATCGAAAACTACAGTTGTCTAATTGATGGCCTATGTAAAGCAGGAAAACTTGAGACTGCGTGGGAGCTTTTTGAAAAACTATCCCAAGAAGGGCTTCAACCAGATGTTGTCACTTATAACATTATGATCCATGGGTTTTGTAAAGTGGGACAAGTAGATAATGCAAATATTTTGTTTGAAAAGATGGAAGAAAATGGTTGTACTCCTGACATAATTGCTTATAATACCCTTCTTTGTGGTTTCTGCGAAGGTAATAAATTAGAGGAGGTGATTAAACTTCTCCATAAGATGGTTCAAAAGGACGTGTCACCAAATGCTGCCAGTTGCACCATAGTCGTTGACATGCTCTGTAAAGATGAAAAATATAAAAAATTTGTAGACTTGCTTCCAAAATTTCCAGTCCAAAGGCATTGA

Coding sequence (CDS)

ATGCCTTCCAAGACCCTCCTCCCTTCCCCTTCTTTCAAACCTAACCTCTCCCCTCTATCTACTCACTCTTCCACTATTCCATCTTCGATTCCCCAAACTTCCTCTACTCATCATCCTAATCCTATATTACCTGCTGCTTTCAATCGCGAAGAGATTTCGTTTCATCACCCTCTTTCATTGTTCCTCCGCAATTGCAAGACAGGTAACATTACTGCAATTCAAGCATTTCATTTCTTTGACCTAATGATGCGTTCACATCCTATCCCCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCTAAGATTAACCATTACTCCCAACTATTTTCTCTCTATAATGAAATGCGCCTTGCTGGACTTTCCCCTGATCTCTTCACGCTAAGTATATTGGCGAATTGCCTTTGTAATGTCAATCGGGTTAGCGAAGCTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGTTATATTCCCAATGTAGTCACATATACGACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCCACCCGGTTATTTCTGAGAATGCAAAAATTAGGTTGTACGCCGAATGCGGTTACTTATGGGACTTTGATAAAGGGGCTATGCCAAACCGGGAATGTTAACATTGCACTTAAGTTGCATAAAGAAATGCTCAATGACGCTAGTCAATATGGGGTTAATTGTAAACCTGGTGTTATTACCTATAGTATCATCATAGATGGGCTTTGTAAGGTTGGACGTGAAGACGAGGCAAAAGAACTTTTTGAGGAAATGAAAGCTCAGGGAATGATTCCCGATGTCATTTCATATAGCACCTTGATTCATGGATTTTGTTGTGCTGGAAAGTGGGATCAGTCTAAACATTTGTTCGATGAGATGGTGGATCAAGGTGTTCAACCAGATATGGTCACATTTAGTGTGTTGATTGATACGCTTTGCAAGGAAGGAAAGGTCACTGAGGCTAAGAAGTTGCTTGAGGTCATGATTCAGAGAGGTATCGTTCCTAATTTGATTACTTATAATTCACTGATTGATGGGTTTTGTATGGTTGGTGATTTGAATAGTGCCAGAGAACTGTTCCTTAGTATGCCAAGCAAAGGATTAGAACCTGATGAGATTAGCTACACTACACTTATTAACGGGTATTGTAAAACTTGGAAGGTGAAAGAAGCAATGAACCTTTACAATGAAATGCTTCAAGTGGGAAAGAGACCAAATGTGACAACATATGGTACCTTGTTAAAAGGACTTTTTCAGAAAGGCAAGGTTGGTGATGCAAAGAAGCTATTTGGTGTCATGAAAACTTATGGTGTTTCGGCAAATTCTCAAATATATGGTATTTTCTTAGATGGGCTGTGTAAGAATGATTGTTTATTTGAAGCAATGGAACTTTTTAATGAGCTCAAATCATACAACTTCAAATTGAACATCGAAAACTACAGTTGTCTAATTGATGGCCTATGTAAAGCAGGAAAACTTGAGACTGCGTGGGAGCTTTTTGAAAAACTATCCCAAGAAGGGCTTCAACCAGATGTTGTCACTTATAACATTATGATCCATGGGTTTTGTAAAGTGGGACAAGTAGATAATGCAAATATTTTGTTTGAAAAGATGGAAGAAAATGGTTGTACTCCTGACATAATTGCTTATAATACCCTTCTTTGTGGTTTCTGCGAAGGTAATAAATTAGAGGAGGTGATTAAACTTCTCCATAAGATGGTTCAAAAGGACGTGTCACCAAATGCTGCCAGTTGCACCATAGTCGTTGACATGCTCTGTAAAGATGAAAAATATAAAAAATTTGTAGACTTGCTTCCAAAATTTCCAGTCCAAAGGCATTGA

Protein sequence

MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKRPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQRH
Homology
[Close]
BLAST of CsaV3_7G027720 vs. NCBI nr
Match: XP_011659273.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFS 113
           FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFS
Sbjct: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFS 112

[Close]
BLAST of CsaV3_7G027720 vs. NCBI nr
Match: KGN44774.1 (hypothetical protein Csa_7G380110 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 111
           FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL
Sbjct: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 110

[Close]
BLAST of CsaV3_7G027720 vs. NCBI nr
Match: XP_011659291.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.0e-44
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           M SKTLLPS SFKPNLSPL T SSTIPSSIPQTSST+HPN +LPAAFNR+ ISFHHPLSL
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQ 110
           FLRNCKTGNITA QAFHFFDLM+RS+PIPPISSFN LLGGLAKINHYSQ
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYSQ 109

[Close]
BLAST of CsaV3_7G027720 vs. NCBI nr
Match: KGN44793.1 (hypothetical protein Csa_7G387770 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-44
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           M SKTLLPS SFKPNLSPL T SSTIPSSIPQTSST+HPN +LPAAFNR+ ISFHHPLSL
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYS 109
           FLRNCKTGNITA QAFHFFDLM+RS+PIPPISSFN LLGGLAKINHYS
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYS 108

[Close]
BLAST of CsaV3_7G027720 vs. NCBI nr
Match: KGN44728.1 (hypothetical protein Csa_7G374710 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-18
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 0 

Query: 3   SKTLLPSPS--FKPNL-SPLSTHSSTIPSSIPQ-TSSTHHPN-PILPAAFNREEISFHHP 62
           SKT +PS S   KPNL S L THS TIPSS P  +S+ HH +  + P  FN   ISF   
Sbjct: 5   SKT-VPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFN-TPISFQQQ 64

Query: 63  LSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHY 108
           LS+FL NCKTGNITA QAF FF LMM S+P PP+SSF  LL GLAKI HY
Sbjct: 65  LSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

[Close]
BLAST of CsaV3_7G027720 vs. TrEMBL
Match: tr|A0A0A0K784|A0A0A0K784_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 111
           FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL
Sbjct: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 110

[Close]
BLAST of CsaV3_7G027720 vs. TrEMBL
Match: tr|A0A0A0K5M0|A0A0A0K5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.0e-44
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSL 60
           M SKTLLPS SFKPNLSPL T SSTIPSSIPQTSST+HPN +LPAAFNR+ ISFHHPLSL
Sbjct: 1   MHSKTLLPSASFKPNLSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSL 60

Query: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYS 109
           FLRNCKTGNITA QAFHFFDLM+RS+PIPPISSFN LLGGLAKINHYS
Sbjct: 61  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFNCLLGGLAKINHYS 108

[Close]
BLAST of CsaV3_7G027720 vs. TrEMBL
Match: tr|A0A0A0K5F6|A0A0A0K5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-18
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 0 

Query: 3   SKTLLPSPS--FKPNL-SPLSTHSSTIPSSIPQ-TSSTHHPN-PILPAAFNREEISFHHP 62
           SKT +PS S   KPNL S L THS TIPSS P  +S+ HH +  + P  FN   ISF   
Sbjct: 5   SKT-VPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFN-TPISFQQQ 64

Query: 63  LSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHY 108
           LS+FL NCKTGNITA QAF FF LMM S+P PP+SSF  LL GLAKI HY
Sbjct: 65  LSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

[Close]
BLAST of CsaV3_7G027720 vs. TrEMBL
Match: tr|A0A1S4DYL3|A0A1S4DYL3_CUCME (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-18
Identity = 66/110 (60.00%), Postives = 72/110 (65.45%), Query Frame = 0 

Query: 3   SKTLLPSPS--FKPNL-SPLSTHSSTIPSSIPQTSSTHHPNP--ILPAAFNREEISFHHP 62
           SKT +PS S   +PNL S L THS  IPSS PQ SS  HP    + P  FN   IS    
Sbjct: 5   SKT-VPSASSIVRPNLSSSLFTHSPIIPSSNPQFSSPIHPKSLHVSPQNFN-TPISCQQQ 64

Query: 63  LSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHY 108
           LS+FL NCKTGNITA QAFHFF LMM S+P PP+SSF  LL GL KI HY
Sbjct: 65  LSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHY 112

[Close]
BLAST of CsaV3_7G027720 vs. TrEMBL
Match: tr|A0A1S4DYL6|A0A1S4DYL6_CUCME (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.8e-17
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 58  LSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFS 113
           + +FLRNCKTGNITA QAFHFFDLM+RS+PIPPISSF+ LLGGLAKI HYS LFS
Sbjct: 7   IPIFLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFDCLLGGLAKIKHYSLLFS 61

The following BLAST results are available for this feature:
BLAST of CsaV3_7G027720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659273.11.5e-55100.00PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
KGN44774.12.1e-54100.00hypothetical protein Csa_7G380110 [Cucumis sativus][more]
XP_011659291.12.0e-4488.07PREDICTED: pentatricopeptide repeat-containing protein At1g62914, mitochondrial-... [more]
KGN44793.17.6e-4487.96hypothetical protein Csa_7G387770 [Cucumis sativus][more]
KGN44728.15.5e-1860.91hypothetical protein Csa_7G374710 [Cucumis sativus][more]
BLAST of CsaV3_7G027720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G027720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G027720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K784|A0A0A0K784_CUCSA1.4e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1[more]
tr|A0A0A0K5M0|A0A0A0K5M0_CUCSA5.0e-4487.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1[more]
tr|A0A0A0K5F6|A0A0A0K5F6_CUCSA3.6e-1860.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1[more]
tr|A0A1S4DYL3|A0A1S4DYL3_CUCME6.2e-1860.00pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis... [more]
tr|A0A1S4DYL6|A0A1S4DYL6_CUCME6.8e-1781.82pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G027720.1CsaV3_7G027720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 228..300
e-value: 3.5E-24
score: 87.3
coord: 369..441
e-value: 4.8E-22
score: 80.3
coord: 301..368
e-value: 6.2E-23
score: 83.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 454..617
e-value: 2.5E-46
score: 160.4
coord: 64..227
e-value: 2.6E-37
score: 130.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 478..507
e-value: 2.6E-8
score: 33.3
coord: 302..333
e-value: 2.2E-11
score: 43.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 410..459
e-value: 1.1E-10
score: 41.4
coord: 159..208
e-value: 1.4E-18
score: 66.7
coord: 235..283
e-value: 2.8E-16
score: 59.3
coord: 340..389
e-value: 2.1E-17
score: 62.9
coord: 515..563
e-value: 1.2E-18
score: 66.9
coord: 91..138
e-value: 2.0E-9
score: 37.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 378..412
e-value: 8.5E-7
score: 26.8
coord: 308..341
e-value: 1.7E-8
score: 32.1
coord: 162..196
e-value: 4.1E-9
score: 34.0
coord: 414..446
e-value: 2.3E-5
score: 22.3
coord: 238..272
e-value: 5.0E-11
score: 40.1
coord: 197..224
e-value: 2.2E-5
score: 22.3
coord: 449..481
e-value: 1.9E-5
score: 22.5
coord: 518..552
e-value: 1.1E-9
score: 35.8
coord: 554..587
e-value: 3.2E-8
score: 31.2
coord: 93..125
e-value: 5.1E-4
score: 18.0
coord: 343..377
e-value: 3.1E-9
score: 34.4
coord: 273..306
e-value: 1.3E-9
score: 35.6
coord: 485..517
e-value: 6.2E-9
score: 33.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 160..194
score: 12.715
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..340
score: 12.945
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 446..480
score: 9.361
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 9.043
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 481..515
score: 13.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..270
score: 13.504
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..618
score: 5.404
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 14.502
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..585
score: 12.014
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 125..159
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 376..410
score: 12.584
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 271..305
score: 13.559
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 341..375
score: 13.066
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 411..445
score: 10.468
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 195..225
score: 10.348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 272..551
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 33..143
coord: 118..272
NoneNo IPR availablePANTHERPTHR24015:SF1594SUBFAMILY NOT NAMEDcoord: 272..551
NoneNo IPR availablePANTHERPTHR24015:SF1594SUBFAMILY NOT NAMEDcoord: 234..365
NoneNo IPR availablePANTHERPTHR24015:SF1594SUBFAMILY NOT NAMEDcoord: 33..143
coord: 118..272
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 234..365
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 515..603
NoneNo IPR availablePANTHERPTHR24015:SF1594SUBFAMILY NOT NAMEDcoord: 515..603
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 375..408
coord: 445..556
coord: 253..336

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G027720CSPI07G10190Wild cucumber (PI 183967)cpicucB417
CsaV3_7G027720CSPI07G15960Wild cucumber (PI 183967)cpicucB414
CsaV3_7G027720Cucsa.263470Cucumber (Gy14) v1cgycucB404
CsaV3_7G027720CsGy7G014480Cucumber (Gy14) v2cgybcucB347
CsaV3_7G027720MELO3C015787Melon (DHL92) v3.5.1cucmeB538
CsaV3_7G027720MELO3C015787.2Melon (DHL92) v3.6.1cucmedB526
CsaV3_7G027720Bhi09G000964Wax gourdcucwgoB726
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_7G027720CsaV3_7G022190Cucumber (Chinese Long) v3cuccucB220
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G027720Cucumber (Chinese Long) v3cuccucB103
CsaV3_7G027720Silver-seed gourdcarcucB0129
CsaV3_7G027720Cucumber (Gy14) v2cgybcucB096
CsaV3_7G027720Cucumber (Gy14) v1cgycucB194
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB0233
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB0767
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB0961
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G027720Cucurbita maxima (Rimu)cmacucB1088
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB0220
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB0454
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB0950
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G027720Cucurbita moschata (Rifu)cmocucB1070
CsaV3_7G027720Cucurbita pepo (Zucchini)cpecucB0189
CsaV3_7G027720Cucurbita pepo (Zucchini)cpecucB0427
CsaV3_7G027720Cucurbita pepo (Zucchini)cpecucB0423
CsaV3_7G027720Cucurbita pepo (Zucchini)cpecucB0791
CsaV3_7G027720Wild cucumber (PI 183967)cpicucB121
CsaV3_7G027720Bottle gourd (USVL1VR-Ls)cuclsiB520
CsaV3_7G027720Bottle gourd (USVL1VR-Ls)cuclsiB532
CsaV3_7G027720Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G027720Melon (DHL92) v3.5.1cucmeB577
CsaV3_7G027720Melon (DHL92) v3.6.1cucmedB544
CsaV3_7G027720Melon (DHL92) v3.6.1cucmedB564
CsaV3_7G027720Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G027720Watermelon (Charleston Gray)cucwcgB592
CsaV3_7G027720Watermelon (Charleston Gray)cucwcgB577
CsaV3_7G027720Watermelon (Charleston Gray)cucwcgB587
CsaV3_7G027720Watermelon (97103) v1cucwmB592
CsaV3_7G027720Watermelon (97103) v1cucwmB613
CsaV3_7G027720Watermelon (97103) v1cucwmB639
CsaV3_7G027720Watermelon (97103) v1cucwmB645
CsaV3_7G027720Watermelon (97103) v2cucwmbB576
CsaV3_7G027720Watermelon (97103) v2cucwmbB556
CsaV3_7G027720Watermelon (97103) v2cucwmbB570
CsaV3_7G027720Watermelon (97103) v2cucwmbB593
CsaV3_7G027720Wax gourdcucwgoB735
CsaV3_7G027720Wax gourdcucwgoB731