CsaV3_7G027230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G027230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING-type E3 ubiquitin transferase
Location	chr7 : 16826170 .. 16826797 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAGTGAGTTACCTTTTGAGAACTAGCCATATTTCAGTTCTTTCTCAGATTTTATATTAGATTTCTTTTTCCTTTTTCTAAATAACTAAGTTGTTTGTACTTCGGTACAAGTCCTTTTTCATTTTATCAATGAAAATCCTTGTTTCCATTTCAAAAATAAATTAATAATAATATTAACTAAGCTGTTTGGAGTAGGAAACACTTGGCTTGAACTTTTTCTCTCTTATTTTGAAATAAAAGTTCTCATGATTTTGATACATCTTTTCTCATAATTTTCTGCTTATTTGATAAGAATGATATTGACATTTAATGGACTGTCCAGAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

mRNA sequence

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

Coding sequence (CDS)

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

Protein sequence

MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDELLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL

Homology

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_011659248.1 (PREDICTED: uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.8e-49
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 109 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 168

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 103
           LLY ECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL
Sbjct: 169 LLYSECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 210

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_011659249.1 (PREDICTED: uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.8e-49
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 105 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 164

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 103
           LLY ECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL
Sbjct: 165 LLYSECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 206

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_011659243.1 (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659244.1 PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659245.1 PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >KGN44724.1 hypothetical protein Csa_7G374670 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKC+NLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLY ECESLDAAV EAREF+E WC KT+K    L+
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_008451242.1 (PREDICTED: U-box domain-containing protein 3 [Cucumis melo] >XP_008451243.1 PREDICTED: U-box domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          L Y ECESLD AV EAREFIE WC KT+K    L+
Sbjct: 61 LFYSECESLDTAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_022959916.1 (U-box domain-containing protein 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTK LPLPK C+NL VVLK LK+VLDDVI+LKLSSDE
Sbjct: 20  MGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVISLKLSSDE 79

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
           LLYRECESLD AV +AREFIE WC K +K    L+
Sbjct: 80  LLYRECESLDIAVNDAREFIENWCPKMSKICSALK 114

[Close]

BLAST of CsaV3_7G027230 vs. TAIR10
Match: AT3G54790.1 (ARM repeat superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

[Close]

BLAST of CsaV3_7G027230 vs. Swiss-Prot
Match: sp|Q8GWV5|PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

[Close]

BLAST of CsaV3_7G027230 vs. TrEMBL
Match: tr|A0A0A0K726|A0A0A0K726_CUCSA (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.4e-37
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKC+NLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLY ECESLDAAV EAREF+E WC KT+K    L+
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. TrEMBL
Match: tr|A0A1S3BS34|A0A1S3BS34_CUCME (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-36
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          L Y ECESLD AV EAREFIE WC KT+K    L+
Sbjct: 61 LFYSECESLDTAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. TrEMBL
Match: tr|F6HZL0|F6HZL0_VITVI (RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_07s0005g03520 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-27
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M T SV+CLINSISRFIHLVSC T KP+P+ K CRN+V +LKLLK VLDDV+N K+ SDE
Sbjct: 1  MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQ 99
          +L++ECE LD AV EAREF+E WC K +K    L+  Q
Sbjct: 61 ILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQ 98

[Close]

BLAST of CsaV3_7G027230 vs. TrEMBL
Match: tr|A0A1U8P3N5|A0A1U8P3N5_GOSHI (RING-type E3 ubiquitin transferase OS=Gossypium hirsutum OX=3635 GN=LOC107954637 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M T SV CL+NSISRFIHLVSC T K  P+ K  RN+V+VLKLLK +LDDVI  ++ SD+
Sbjct: 1  MDTTSVSCLVNSISRFIHLVSCQTIKVAPVEKDYRNMVIVLKLLKPLLDDVIECEIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          +LY+ECE LD  V EAREF+E WC K +K  + L+
Sbjct: 61 ILYKECEELDMLVNEAREFMEHWCPKMSKIHRVLQ 95

[Close]

BLAST of CsaV3_7G027230 vs. TrEMBL
Match: tr|A0A0D2PT28|A0A0D2PT28_GOSRA (RING-type E3 ubiquitin transferase OS=Gossypium raimondii OX=29730 GN=B456_001G178000 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M T SV+CL+NSISRFIHLVSC T K  P+ K  RN+V+VLKLLK +LDDVI  ++ SD+
Sbjct: 1  MDTTSVRCLVNSISRFIHLVSCQTIKVAPVEKDYRNMVIVLKLLKPLLDDVIECEIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          +LY+ECE LD  V EAREF E WC K +K  + L+
Sbjct: 61 ILYKECEELDMLVNEAREFTENWCPKMSKIHRVLQ 95

The following BLAST results are available for this feature:

BLAST of CsaV3_7G027230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659248.1	3.8e-49	99.02	PREDICTED: uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus]	[more]
XP_011659249.1	3.8e-49	99.02	PREDICTED: uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus]	[more]
XP_011659243.1	1.3e-36	85.26	PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659244.1 P...	[more]
XP_008451242.1	3.7e-36	85.26	PREDICTED: U-box domain-containing protein 3 [Cucumis melo] >XP_008451243.1 PRED...	[more]
XP_022959916.1	2.9e-33	80.00	U-box domain-containing protein 3-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_7G027230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54790.1	1.1e-18	48.31	ARM repeat superfamily protein	[more]

BLAST of CsaV3_7G027230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWV5\|PUB3_ARATH	2.0e-17	48.31	U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 S...	[more]

BLAST of CsaV3_7G027230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K726\|A0A0A0K726_CUCSA	8.4e-37	85.26	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE...	[more]
tr\|A0A1S3BS34\|A0A1S3BS34_CUCME	2.4e-36	85.26	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 ...	[more]
tr\|F6HZL0\|F6HZL0_VITVI	2.7e-27	64.29	RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_07s0005g035...	[more]
tr\|A0A1U8P3N5\|A0A1U8P3N5_GOSHI	4.0e-23	60.00	RING-type E3 ubiquitin transferase OS=Gossypium hirsutum OX=3635 GN=LOC107954637...	[more]
tr\|A0A0D2PT28\|A0A0D2PT28_GOSRA	4.0e-23	60.00	RING-type E3 ubiquitin transferase OS=Gossypium raimondii OX=29730 GN=B456_001G1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G027230.1	CsaV3_7G027230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315:SF119	U-BOX DOMAIN-CONTAINING PROTEIN 3	coord: 1..94
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..94

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G027230	Watermelon (97103) v2	cucwmbB593
CsaV3_7G027230	Wax gourd	cucwgoB731
CsaV3_7G027230	Silver-seed gourd	carcucB0013
CsaV3_7G027230	Silver-seed gourd	carcucB0102
CsaV3_7G027230	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G027230	Cucumber (Gy14) v1	cgycucB590
CsaV3_7G027230	Cucurbita maxima (Rimu)	cmacucB0457
CsaV3_7G027230	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G027230	Cucurbita moschata (Rifu)	cmocucB0450
CsaV3_7G027230	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G027230	Cucurbita pepo (Zucchini)	cpecucB0182
CsaV3_7G027230	Cucurbita pepo (Zucchini)	cpecucB0423
CsaV3_7G027230	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G027230	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G027230	Melon (DHL92) v3.5.1	cucmeB538
CsaV3_7G027230	Melon (DHL92) v3.5.1	cucmeB558
CsaV3_7G027230	Melon (DHL92) v3.6.1	cucmedB526
CsaV3_7G027230	Melon (DHL92) v3.6.1	cucmedB545
CsaV3_7G027230	Watermelon (Charleston Gray)	cucwcgB547
CsaV3_7G027230	Watermelon (97103) v1	cucwmB592