CsaV3_7G026970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G026970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 16569378 .. 16569837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTCACCCCTTTAAATCCTCCCACGCCTCCCCATTTCCTTCTTCATCACGCTCCCCATTCTCATTCTTCGGCAAAGCTAAGAGATTTAACATGCGCCGCGGCAAGAACTCAAGGATCGTTTTTGCCCTCATCGCAGGGCTTCTACTTCTGGTTGGGATCGCGACGGCGATGGCGAGGCCGATTCATGACTCTGCCGCTCCATTGCGTAGACCTCCTATTCCGCCGTCTGGCCGGAATCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGATGGATATAAAGGATCAGATCGTGCTGAGGGGAGATTATTGTTTGTAATTATATGTTCTTAATTTCTCTTCATGTTCTTTCTTCTCTTGTTTTTTTTTTTTACCAACGACCTCTTTTGACGTACCCAATGTAAAACCATCGTTCATCATGCAATGAAAGATGTTTGTAAT

mRNA sequence

ATGGCGTTTCACCCCTTTAAATCCTCCCACGCCTCCCCATTTCCTTCTTCATCACGCTCCCCATTCTCATTCTTCGGCAAAGCTAAGAGATTTAACATGCGCCGCGGCAAGAACTCAAGGATCGTTTTTGCCCTCATCGCAGGGCTTCTACTTCTGGTTGGGATCGCGACGGCGATGGCGAGGCCGATTCATGACTCTGCCGCTCCATTGCGTAGACCTCCTATTCCGCCGTCTGGCCGGAATCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGA

Coding sequence (CDS)

ATGGCGTTTCACCCCTTTAAATCCTCCCACGCCTCCCCATTTCCTTCTTCATCACGCTCCCCATTCTCATTCTTCGGCAAAGCTAAGAGATTTAACATGCGCCGCGGCAAGAACTCAAGGATCGTTTTTGCCCTCATCGCAGGGCTTCTACTTCTGGTTGGGATCGCGACGGCGATGGCGAGGCCGATTCATGACTCTGCCGCTCCATTGCGTAGACCTCCTATTCCGCCGTCTGGCCGGAATCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGA

Protein sequence

MAFHPFKSSHASPFPSSSRSPFSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMARPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL
Homology
[Close]
BLAST of CsaV3_7G026970 vs. NCBI nr
Match: KGN44699.1 (hypothetical protein Csa_7G372930 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60
          MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA
Sbjct: 1  MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60

Query: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 97
          RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL
Sbjct: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 96

[Close]
BLAST of CsaV3_7G026970 vs. TrEMBL
Match: tr|A0A0A0K702|A0A0A0K702_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60
          MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA
Sbjct: 1  MAFHPFKSSHASPXXXXXXXXXSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60

Query: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 97
          RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL
Sbjct: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 96

The following BLAST results are available for this feature:
BLAST of CsaV3_7G026970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44699.13.6e-41100.00hypothetical protein Csa_7G372930 [Cucumis sativus][more]
BLAST of CsaV3_7G026970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G026970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G026970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K702|A0A0A0K702_CUCSA2.4e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G026970.1CsaV3_7G026970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..83

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G026970Cp4.1LG12g10680Cucurbita pepo (Zucchini)cpecucB0182
CsaV3_7G026970Cla014863Watermelon (97103) v1cucwmB592
CsaV3_7G026970ClCG09G008100Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G026970Cla97C09G170760Watermelon (97103) v2cucwmbB593
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G026970Silver-seed gourdcarcucB0013
CsaV3_7G026970Silver-seed gourdcarcucB0102
CsaV3_7G026970Cucumber (Gy14) v2cgybcucB347
CsaV3_7G026970Cucumber (Gy14) v1cgycucB590
CsaV3_7G026970Cucurbita maxima (Rimu)cmacucB0457
CsaV3_7G026970Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G026970Cucurbita moschata (Rifu)cmocucB0450
CsaV3_7G026970Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G026970Cucurbita pepo (Zucchini)cpecucB0243
CsaV3_7G026970Wild cucumber (PI 183967)cpicucB414
CsaV3_7G026970Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G026970Melon (DHL92) v3.5.1cucmeB542
CsaV3_7G026970Melon (DHL92) v3.5.1cucmeB558
CsaV3_7G026970Melon (DHL92) v3.6.1cucmedB531
CsaV3_7G026970Melon (DHL92) v3.6.1cucmedB545
CsaV3_7G026970Wax gourdcucwgoB731