CsaV3_7G026530 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G026530
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 16075409 .. 16075735 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

mRNA sequence

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

Coding sequence (CDS)

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

Protein sequence

MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS

Homology

[Close]

BLAST of CsaV3_7G026530 vs. NCBI nr
Match: KGN44648.1 (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 2.4e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
           IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of CsaV3_7G026530 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QY M+LGFT VT SR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
            + TESSTPPRPS NLIRPSG VIQ RP AS  SNR+SS PPTTYS
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYS 105

[Close]

BLAST of CsaV3_7G026530 vs. TrEMBL
Match: tr|A0A0A0K595|A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
           IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of CsaV3_7G026530 vs. TrEMBL
Match: tr|E5GCE6|E5GCE6_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-27
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QY M+LGFT VT SR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
            + TESSTPPRPS NLIRPSG VIQ RP AS  SNR+SS PPTTYS
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYS 105

The following BLAST results are available for this feature:

BLAST of CsaV3_7G026530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44648.1	2.4e-49	100.00	hypothetical protein Csa_7G361530 [Cucumis sativus]	[more]
ADN34145.1	1.3e-26	70.75	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of CsaV3_7G026530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G026530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G026530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K595\|A0A0A0K595_CUCSA	1.6e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G361530 PE=4 SV=1	[more]
tr\|E5GCE6\|E5GCE6_CUCME	8.3e-27	70.75	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G026530.1	CsaV3_7G026530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G026530	CSPI07G14750	Wild cucumber (PI 183967)	cpicucB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G026530	Silver-seed gourd	carcucB0013
CsaV3_7G026530	Silver-seed gourd	carcucB0102
CsaV3_7G026530	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G026530	Cucumber (Gy14) v1	cgycucB590
CsaV3_7G026530	Cucurbita maxima (Rimu)	cmacucB0457
CsaV3_7G026530	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G026530	Cucurbita moschata (Rifu)	cmocucB0450
CsaV3_7G026530	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G026530	Cucurbita pepo (Zucchini)	cpecucB0182
CsaV3_7G026530	Cucurbita pepo (Zucchini)	cpecucB0416
CsaV3_7G026530	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G026530	Melon (DHL92) v3.5.1	cucmeB539
CsaV3_7G026530	Melon (DHL92) v3.6.1	cucmedB527
CsaV3_7G026530	Watermelon (Charleston Gray)	cucwcgB547
CsaV3_7G026530	Watermelon (97103) v1	cucwmB592
CsaV3_7G026530	Watermelon (97103) v2	cucwmbB593
CsaV3_7G026530	Wax gourd	cucwgoB731