CsaV3_7G024670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13719096 .. 13721349 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAATCCAATTAATTCTTATAGTTCTATTAAATAAAATTAGTTAGATTCAAATTTTGTGGTTTTGTAATCAGATTAAAACATTATTATATAATTACCATAACAAGTTGGTCAACTATATTAAACTTTAACTACTCAACAACTTCTTATAATTGCATCTACATTCTTGTTTTTCTTCATTGTCTTGTTGATGATATTTACGATGACTTGTTTTGCAAGAAACTTTTATGTATATAAGGGAGGAGGATAGGTTTTAGAAGTAAAACCCCAAAACTCTAATTGTAATGGGCTCTTCAATGGCCTCACTTCTTGTTGCAATCTTAATTGTATTTCTAACCTTCCCATCATCCATTTCTGGAGACTATGGTTACTATTTCTCTCCACAGCCACCACCTTTGTTGATTTACTATACACCTTTACCACCTATTTATAAATCTTCTCCCCCTCTTTTATCCTTTTACTCTCCTCCTCCACCACTACTATATCCATCTTCTCCTCCACCTGTATATAAATTTTCTCCACCACCAGTTTATCCATATCCTCCATATTCGGTTTATAAATCTCCTCCACCACCAACCTACCCCTCCCCACCACCCCCTGTCTATAAATCTCCTCCACCACCTGTTTATTCCTCTCCTTCACCTCCTGTGTATCACACTCCTCCTCCACCAATCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTGTTTATTTCTCTCCTCCACCTCCGGTGTACCACTCTCCTCTTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTATTTATAAATCTCCTCCACCACCTGTTTATTCCCCTCCTCCACCTCCTCTGATGTGCCACTTTCCCCCTCCACTAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACTACCTATTTATTCCTCTCCTCCACCTCTGGTGTACCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATTAATCTCCTCCACCGCCAATGTACTCCTCCTCCTTCTCCCCCAGATTACTCATCTCCTCCACCTTCAATTATACTTATAAATCTCCTCCACCACCTATTTACCCCTTGCCTCTACTGTCTGTTTACAACTCTCCTCCACTGCCCATCTACCCCTTTCCTCCATCATCTGTTTACTACTCTCCTTCACTATCTATTTACTACTCACCTCCACCATACGTTTATCCATCTCATTTATAAATCTCCATTGTCGCTTATTTATCTCTCTTCGTCCTCCTGCGTACTACTCTCCTCCTCCACCACTTGTCTATCCCTCTCTTTCACCCCTGGTCTACAAATCTCCTCCACTACTAGTGTACCCCTCTCCTCCTCCTCCCATATATAAATCTCCTCCACCACTAGTTTACCCCTCTCCTCCACCTTCGGTTTATAAATCTCCCCTACCACTAGTGTACCCTTCTCCTCCACCCTCTATCTATAAATATCCTCCACCTCTAGTCCATTACTATCTTCCTCCACCAGTATACTACTCTCCAGCACCAACAAAATATATGTAAAAGTCATCTCCTCCTCCACCTTCATACTTTTAGGTTAAGTTATATACTTTACTATCAACTACATTATGATGAGCTTCAAATGTTGATAAATTACTCAAATGTATTCATGACTTTCAACTTACATTTTAATCAAGTTTACTTGGTTAATTTGACAGGAACAACAAGGAAGGAATATACAATTTTCAAATCAACAAGAAGGATAGCCCCGATGAAGATCATCAATCATTGTTATACAAAAAAGGCTCTTTTATTTGTTTGTTGATAGCATCTATGATATATCTTTAGTTGTTGCAACATGTCTTATTGATCAATAAAGTTAATGCTTCTGTGCTTCTTGGTAAAGAAAAATTCAAAATTCAAAATTTGTGTACTGTGAGACATGTGAATGAAATATATTGCTTTAACTTTTAG

mRNA sequence

ATGGGCTCTTCAATGGCCTCACTTCTTGTTGCAATCTTAATTGTATTTCTAACCTTCCCATCATCCATTTCTGGAGACTATGGTTACTATTTCTCTCCACAGCCACCACCTTTGTTGATTTACTATACACCTTTACCACCTATTTATAAATCTTCTCCCCCTCTTTTATCCTTTTACTCTCCTCCTCCACCACTACTATATCCATCTTCTCCTCCACCTGTATATAAATTTTCTCCACCACCAGTTTATCCATATCCTCCATATTCGGTTTATAAATCTCCTCCACCACCAACCTACCCCTCCCCACCACCCCCTGTCTATAAATCTCCTCCACCACCTGTTTATTCCTCTCCTTCACCTCCTGTGTATCACACTCCTCCTCCACCAATCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTGTTTATTTCTCTCCTCCACCTCCGGTGTACCACTCTCCTCTTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTATTTATAAATCTCCTCCACCACCTGTTTATTCCCCTCCTCCACCTCCTCTGATGTGCCACTTTCCCCCTCCACTAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACTACCTATTTATTCCTCTCCTCCACCTCTGGTGTACCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATTAA

Coding sequence (CDS)

ATGGGCTCTTCAATGGCCTCACTTCTTGTTGCAATCTTAATTGTATTTCTAACCTTCCCATCATCCATTTCTGGAGACTATGGTTACTATTTCTCTCCACAGCCACCACCTTTGTTGATTTACTATACACCTTTACCACCTATTTATAAATCTTCTCCCCCTCTTTTATCCTTTTACTCTCCTCCTCCACCACTACTATATCCATCTTCTCCTCCACCTGTATATAAATTTTCTCCACCACCAGTTTATCCATATCCTCCATATTCGGTTTATAAATCTCCTCCACCACCAACCTACCCCTCCCCACCACCCCCTGTCTATAAATCTCCTCCACCACCTGTTTATTCCTCTCCTTCACCTCCTGTGTATCACACTCCTCCTCCACCAATCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTGTTTATTTCTCTCCTCCACCTCCGGTGTACCACTCTCCTCTTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACCACCTATTTATTCCTCTCCTCCACCTCCGGTGCATGATCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTATTTATAAATCTCCTCCACCACCTGTTTATTCCCCTCCTCCACCTCCTCTGATGTGCCACTTTCCCCCTCCACTAGTCTACTCATCTCCTCCACCTCCTGTTTATAAATCTCCTCCACTACCTATTTATTCCTCTCCTCCACCTCTGGTGTACCACTCTCCTCCTCCACCAGTCTACTCATCTCCTCCACCTCCTGTTTATTAA

Protein sequence

MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPPIYKSSPPLLSFYSPPPPLLYPSSPPPVYKFSPPPVYPYPPYSVYKSPPPPTYPSPPPPVYKSPPPPVYSSPSPPVYHTPPPPIYSSPPPPVYKSPPPPVYFSPPPPVYHSPLPPVYSSPPPPVYKSPPPPIYSSPPPPVHDHSPPPPVYSSPPPPVYKSPPPPIYSSPPPPVHDHSPPPPVYSSPPPPVYKSPPPPIYSSPPPPVHDHSPPPPVYSSPPPPIYKSPPPPVYSPPPPPLMCHFPPPLVYSSPPPPVYKSPPLPIYSSPPPLVYHSPPPPVYSSPPPPVY
Homology
[Close]
BLAST of CsaV3_7G024670 vs. NCBI nr
Match: XP_011659118.1 (PREDICTED: extensin-1-like [Cucumis sativus] >XP_011659119.1 PREDICTED: extensin-1-like [Cucumis sativus] >KGN44476.1 hypothetical protein Csa_7G304870 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP 48
          MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP
Sbjct: 1  MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP 47

[Close]
BLAST of CsaV3_7G024670 vs. TrEMBL
Match: tr|A0A0A0K9I8|A0A0A0K9I8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304870 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP 48
          MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP
Sbjct: 1  MGSSMASLLVAILIVFLTFPSSISGDYGYYFSPQPPPLLIYYTPLPP 47

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659118.16.2e-16100.00PREDICTED: extensin-1-like [Cucumis sativus] >XP_011659119.1 PREDICTED: extensin... [more]
BLAST of CsaV3_7G024670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9I8|A0A0A0K9I8_CUCSA4.1e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024670.1CsaV3_7G024670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..265
NoneNo IPR availablePANTHERPTHR36586FAMILY NOT NAMEDcoord: 36..275

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G024670CSPI07G12700Wild cucumber (PI 183967)cpicucB414
CsaV3_7G024670CsGy7G011770Cucumber (Gy14) v2cgybcucB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024670Cucurbita pepo (Zucchini)cpecucB0584
CsaV3_7G024670Cucurbita pepo (Zucchini)cpecucB0732
CsaV3_7G024670Cucurbita pepo (Zucchini)cpecucB0990
CsaV3_7G024670Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024670Bottle gourd (USVL1VR-Ls)cuclsiB548
CsaV3_7G024670Melon (DHL92) v3.5.1cucmeB540
CsaV3_7G024670Melon (DHL92) v3.6.1cucmedB529
CsaV3_7G024670Watermelon (Charleston Gray)cucwcgB544
CsaV3_7G024670Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024670Watermelon (Charleston Gray)cucwcgB602
CsaV3_7G024670Watermelon (97103) v1cucwmB588
CsaV3_7G024670Watermelon (97103) v1cucwmB592
CsaV3_7G024670Watermelon (97103) v2cucwmbB593
CsaV3_7G024670Wax gourdcucwgoB733
CsaV3_7G024670Wax gourdcucwgoB721
CsaV3_7G024670Silver-seed gourdcarcucB0075
CsaV3_7G024670Silver-seed gourdcarcucB0306
CsaV3_7G024670Silver-seed gourdcarcucB0877
CsaV3_7G024670Cucumber (Gy14) v1cgycucB080
CsaV3_7G024670Cucurbita maxima (Rimu)cmacucB0053
CsaV3_7G024670Cucurbita maxima (Rimu)cmacucB0370
CsaV3_7G024670Cucurbita maxima (Rimu)cmacucB0586
CsaV3_7G024670Cucurbita maxima (Rimu)cmacucB0919
CsaV3_7G024670Cucurbita moschata (Rifu)cmocucB0039
CsaV3_7G024670Cucurbita moschata (Rifu)cmocucB0367
CsaV3_7G024670Cucurbita moschata (Rifu)cmocucB0574
CsaV3_7G024670Cucurbita moschata (Rifu)cmocucB0911