CsaV3_7G024660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13709333 .. 13711335 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGTAAGCCATCTATTTTCTCTCTTTCTTGTTTATCTCATTTCATGATTGTTTTCATTTTCCGGTAGGCCTTCGATTTTTCCTTTCTTTCTATCATTTTTTTTGTTACTGATATGATCGATTTCAAGTTAAATGAAAACTAATCTTCAGGATCCGTTTTTGATGGACTTTTGTAGTTTCCTTGCTGTGTCGTTCAGATCTGTGGATTTGGTTGGGATGTTTTTTTCTTGCATCTTGTAATTGTCTGAAATGAAGAATATGATGGTTGCTTTAAGTTTAATGTGTGTTTACATGAAGCAGATGACAAAGTTGAAGAATTACTGTGTTCCATTTTGTTATATTTCTCATCTAGTATTATTTGTAGAACCCTGGAATGTTTGCTATGTCCGTTTTGTTTCCATGTCGGTTATTTTTTGTATTTGCTTACGACATATTATAGTTTTCGATTATTTATTAGTTTTTATAGGATTGCAATCTTGATAAAATAGTGGTGTTTCTGCCCTCGTCTCAATACTCAAATTAGTAATTATTTTTATTGTATGAGTATGAGTTGATTAAATTCTCTTTATTTTAAAGGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTGGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGAAATCAGGTTTTGTTACTTTATTAGCTGGCAATTTAGAATTACTTTACCTTATGTATTACACTTCTTTCCTATGGTCTTAACTTGCAACAATCCTTCTCAAGTTCATAATAGATTTCTAGGATTTTCTCCAACAATCTTAAATAAATAGACAATTAAATTGTAAATCAAAGTATAGGTAAACTAAAAGAAATTGTCAGAGAACAACAAAGGTTTATCATAAAACGTAGTCTATGCACACGAGACAATGAAGCTTGAACATTCTGACAAATGCTTCTAAGCTTGAACGTTGAACATTGTATAGGGCACCACTAAGAAGGAGTGTGTGTGTGTATATATATACATGAAAACATAGGTTTGTTAAAATGTATTTCTCCAACTTGCAACAAGGAAATTTAAACTATGGACTTGAAGAGGTTGTAAGCTTTTACACCAATAATAAACATGGTAGATAGCTAACTCAAGAAAATCCCCAGCAGTTATTTCTTTGTCATGAAAAACTATGTTGTATCTGATCTCAAATCTTCCATAAAATTGCTCTGATCAAAATAGACTGTAGATGCTTCTTAATAGTTTTGAAAGGGTGATCAACGAACAACATTTTGATCCAATCAACAGTGTCCAAAGAGGGGGCAAGAAGAGAGATGGTCACCCCAAATTGCAGCTGAAATTTGATAGTGGAATGAAACATGGTTTTGTGCTTTGGTGCTTCTTTTGCAAAGGTAGCACGAAAATGGAGAAATGTAGAGCCAAGGGCATTTTTTGTTTCCATTGTGTTTAGGCAAGAATGGATAGTTTTTATAAGAAAGGAACATAATTCTTTTCAGGAAAGAAAGCTTCTATAGTTGTTTATAAAGATCCGATGATGTGGGGGCACTCAGATTGAGATGAGAAACCAAAGAGTTTATAGTAAGATGCTATTGGTTTGCGTGAAAGAAACCCATCTTGTAATCTCCTCATCTTTAGATTCTATCTAATGTTTAGAATACAAGAGCTGTTTCCACGATTCTAAGCCTTTTTGATGGATTTTTTTAGTCTCAGCACTGGTATAAAGTTTTGGATAACTTCTACTGAGGGTACCATCCCCAATCCAGTGGGCATTCTAGAAAGCGGTAGTTTTTCCTTCTCCAACCAAGCAATGGATGTGGCTGTAAAAGAGGCACGTTTGGTTGAGAAGGTCTACAAGCGATTCTTGAAGAAACTTTGCACTTCTTGGATGGCTTTTGATCAAAATGTTGCAAACC

mRNA sequence

ACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTGGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGAAATCAGGTTTTGTTACTTTATTAGCTGGCAATTTAGAATTACTTTACCTTATGTATTACACTTCTTTCCTATGGTCTTAACTTGCAACAATCCTTCTCAAGTTCATAATAGATTTCTAGGATTTTCTCCAACAATCTTAAATAAATAG

Coding sequence (CDS)

ACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTGGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGAAATCAGGTTTTGTTACTTTATTAGCTGGCAATTTAGAATTACTTTACCTTATGTATTACACTTCTTTCCTATGGTCTTAACTTGCAACAATCCTTCTCAAGTTCATAATAGATTTCTAGGATTTTCTCCAACAATCTTAAATAAATAG

Protein sequence

TEGFLCSSSFDLRHRESKRDHPELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVLHFFPMVLTCNNPSQVHNRFLGFSPTILNK
Homology
[Close]
BLAST of CsaV3_7G024660 vs. NCBI nr
Match: KGN44475.1 (hypothetical protein Csa_7G304370 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 23  ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL 82
           ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL
Sbjct: 27  ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL 86

Query: 83  HFFPMVLTCNNPSQVHNRFLGFSPTILNK 112
           HFFPMVLTCNNPSQVHNRFLGFSPTILNK
Sbjct: 87  HFFPMVLTCNNPSQVHNRFLGFSPTILNK 115

[Close]
BLAST of CsaV3_7G024660 vs. TrEMBL
Match: tr|A0A0A0K461|A0A0A0K461_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304370 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 23  ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL 82
           ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL
Sbjct: 27  ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEIRFCYFISWQFRITLPYVL 86

Query: 83  HFFPMVLTCNNPSQVHNRFLGFSPTILNK 112
           HFFPMVLTCNNPSQVHNRFLGFSPTILNK
Sbjct: 87  HFFPMVLTCNNPSQVHNRFLGFSPTILNK 115

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024660 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44475.12.3e-44100.00hypothetical protein Csa_7G304370 [Cucumis sativus][more]
BLAST of CsaV3_7G024660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K461|A0A0A0K461_CUCSA1.5e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024660.1CsaV3_7G024660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G024660CSPI07G12690Wild cucumber (PI 183967)cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024660Watermelon (97103) v2cucwmbB593
CsaV3_7G024660Wax gourdcucwgoB733
CsaV3_7G024660Wax gourdcucwgoB721
CsaV3_7G024660Silver-seed gourdcarcucB0075
CsaV3_7G024660Silver-seed gourdcarcucB0306
CsaV3_7G024660Silver-seed gourdcarcucB0877
CsaV3_7G024660Cucumber (Gy14) v2cgybcucB347
CsaV3_7G024660Cucumber (Gy14) v1cgycucB080
CsaV3_7G024660Cucurbita maxima (Rimu)cmacucB0053
CsaV3_7G024660Cucurbita maxima (Rimu)cmacucB0370
CsaV3_7G024660Cucurbita maxima (Rimu)cmacucB0586
CsaV3_7G024660Cucurbita maxima (Rimu)cmacucB0919
CsaV3_7G024660Cucurbita moschata (Rifu)cmocucB0039
CsaV3_7G024660Cucurbita moschata (Rifu)cmocucB0367
CsaV3_7G024660Cucurbita moschata (Rifu)cmocucB0574
CsaV3_7G024660Cucurbita moschata (Rifu)cmocucB0911
CsaV3_7G024660Cucurbita pepo (Zucchini)cpecucB0584
CsaV3_7G024660Cucurbita pepo (Zucchini)cpecucB0732
CsaV3_7G024660Cucurbita pepo (Zucchini)cpecucB0990
CsaV3_7G024660Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024660Bottle gourd (USVL1VR-Ls)cuclsiB548
CsaV3_7G024660Melon (DHL92) v3.5.1cucmeB540
CsaV3_7G024660Melon (DHL92) v3.6.1cucmedB529
CsaV3_7G024660Watermelon (Charleston Gray)cucwcgB544
CsaV3_7G024660Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024660Watermelon (Charleston Gray)cucwcgB602
CsaV3_7G024660Watermelon (97103) v1cucwmB588
CsaV3_7G024660Watermelon (97103) v1cucwmB592