CsaV3_7G024310 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G024310
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 13342003 .. 13342368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGAAATTACCGAAAAACGAGGGTAAATTTAGGAGGGCTTGGTTTTCAAATTAAAGACTTTTGGGAGAAATGGACATGTGAAACGTCCAAATCCATTGAAACCATAAACCTATCCTTTCACAATTTGGAACGTCTTGCACGACTGGTGAAAATGTTGGTTCCACCGAACGGTGGCAACACCATGGGACGAGGAAGGCGAGTTGGAGAGCAGCGGAGTGTTGGAGGGATCTGCTACATGGAACTACCCTGCTACTTGAGAACCTCAGCGAGAGCGGCACCTAATAAAAGACCGGTGAAAGACGCTTTCCATCGGACGACGTCGGCTATCACGGATTTTCTTTTTCATTCTTTTGCTTTGTAG

mRNA sequence

ATGAGGGGAAATTACCGAAAAACGAGGGTAAATTTAGGAGGGCTTGGTTTTCAAATTAAAGACTTTTGGGAGAAATGGACATGTGAAACGTCCAAATCCATTGAAACCATAAACCTATCCTTTCACAATTTGGAACGTCTTGCACGACTGGTGAAAATGTTGGTTCCACCGAACGGTGGCAACACCATGGGACGAGGAAGGCGAGTTGGAGAGCAGCGGAGTGTTGGAGGGATCTGCTACATGGAACTACCCTGCTACTTGAGAACCTCAGCGAGAGCGGCACCTAATAAAAGACCGGTGAAAGACGCTTTCCATCGGACGACGTCGGCTATCACGGATTTTCTTTTTCATTCTTTTGCTTTGTAG

Coding sequence (CDS)

ATGAGGGGAAATTACCGAAAAACGAGGGTAAATTTAGGAGGGCTTGGTTTTCAAATTAAAGACTTTTGGGAGAAATGGACATGTGAAACGTCCAAATCCATTGAAACCATAAACCTATCCTTTCACAATTTGGAACGTCTTGCACGACTGGTGAAAATGTTGGTTCCACCGAACGGTGGCAACACCATGGGACGAGGAAGGCGAGTTGGAGAGCAGCGGAGTGTTGGAGGGATCTGCTACATGGAACTACCCTGCTACTTGAGAACCTCAGCGAGAGCGGCACCTAATAAAAGACCGGTGAAAGACGCTTTCCATCGGACGACGTCGGCTATCACGGATTTTCTTTTTCATTCTTTTGCTTTGTAG

Protein sequence

MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGGNTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFAL

Homology

[Close]

BLAST of CsaV3_7G024310 vs. NCBI nr
Match: KGN44435.1 (hypothetical protein Csa_7G290580 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 7.6e-65
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG 60
           MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG
Sbjct: 1   MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG 60

Query: 61  NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA 120
           NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA
Sbjct: 61  NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA 120

Query: 121 L 122
           L
Sbjct: 121 L 121

[Close]

BLAST of CsaV3_7G024310 vs. TrEMBL
Match: tr|A0A0A0K410|A0A0A0K410_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290580 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.0e-65
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG 60
           MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG
Sbjct: 1   MRGNYRKTRVNLGGLGFQIKDFWEKWTCETSKSIETINLSFHNLERLARLVKMLVPPNGG 60

Query: 61  NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA 120
           NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA
Sbjct: 61  NTMGRGRRVGEQRSVGGICYMELPCYLRTSARAAPNKRPVKDAFHRTTSAITDFLFHSFA 120

Query: 121 L 122
           L
Sbjct: 121 L 121

The following BLAST results are available for this feature:

BLAST of CsaV3_7G024310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44435.1	7.6e-65	100.00	hypothetical protein Csa_7G290580 [Cucumis sativus]	[more]

BLAST of CsaV3_7G024310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G024310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G024310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K410\|A0A0A0K410_CUCSA	5.0e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290580 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G024310.1	CsaV3_7G024310.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G024310	CSPI07G12300	Wild cucumber (PI 183967)	cpicucB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G024310	Silver-seed gourd	carcucB0006
CsaV3_7G024310	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G024310	Cucumber (Gy14) v1	cgycucB080
CsaV3_7G024310	Cucurbita maxima (Rimu)	cmacucB0048
CsaV3_7G024310	Cucurbita maxima (Rimu)	cmacucB0586
CsaV3_7G024310	Cucurbita maxima (Rimu)	cmacucB0599
CsaV3_7G024310	Cucurbita moschata (Rifu)	cmocucB0034
CsaV3_7G024310	Cucurbita moschata (Rifu)	cmocucB0039
CsaV3_7G024310	Cucurbita moschata (Rifu)	cmocucB0574
CsaV3_7G024310	Cucurbita pepo (Zucchini)	cpecucB0732
CsaV3_7G024310	Cucurbita pepo (Zucchini)	cpecucB0990
CsaV3_7G024310	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G024310	Melon (DHL92) v3.5.1	cucmeB540
CsaV3_7G024310	Melon (DHL92) v3.6.1	cucmedB529
CsaV3_7G024310	Watermelon (Charleston Gray)	cucwcgB547
CsaV3_7G024310	Watermelon (97103) v1	cucwmB592
CsaV3_7G024310	Watermelon (97103) v2	cucwmbB593
CsaV3_7G024310	Wax gourd	cucwgoB733