CsaV3_7G024300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13337724 .. 13337978 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACGAAGCAGCTGGGAAGGAGGCGCGACCAACAAAAATGCGCAGTTCAAAAAATCTACGCCGCCGGAGGTCTGGGTCGAGTCTCGGCGGACCGTTTGTGGAAGAAGCTAACGCCGCCGCTAGTCGTGGGTGTTTGCAGTTCTGCTATCGGAAGAGAATGGGAATGGGGTGGGTGAATCGCTCGTGGCTACGGAAGGTTGTGCCGCCGAGGTCGTCGCCGGAGATGATCAGGCTGAGGGTTGAGACGTGA

mRNA sequence

ATGTCGTACGAAGCAGCTGGGAAGGAGGCGCGACCAACAAAAATGCGCAGTTCAAAAAATCTACGCCGCCGGAGGTCTGGGTCGAGTCTCGGCGGACCGTTTGTGGAAGAAGCTAACGCCGCCGCTAGTCGTGGGTGTTTGCAGTTCTGCTATCGGAAGAGAATGGGAATGGGGTGGGTGAATCGCTCGTGGCTACGGAAGGTTGTGCCGCCGAGGTCGTCGCCGGAGATGATCAGGCTGAGGGTTGAGACGTGA

Coding sequence (CDS)

ATGTCGTACGAAGCAGCTGGGAAGGAGGCGCGACCAACAAAAATGCGCAGTTCAAAAAATCTACGCCGCCGGAGGTCTGGGTCGAGTCTCGGCGGACCGTTTGTGGAAGAAGCTAACGCCGCCGCTAGTCGTGGGTGTTTGCAGTTCTGCTATCGGAAGAGAATGGGAATGGGGTGGGTGAATCGCTCGTGGCTACGGAAGGTTGTGCCGCCGAGGTCGTCGCCGGAGATGATCAGGCTGAGGGTTGAGACGTGA

Protein sequence

MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWVNRSWLRKVVPPRSSPEMIRLRVET
Homology
[Close]
BLAST of CsaV3_7G024300 vs. NCBI nr
Match: KGN44434.1 (hypothetical protein Csa_7G290570 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV 60
          MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV
Sbjct: 1  MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV 60

Query: 61 NRSWLRKVVPPRSSPEMIRLRVET 85
          NRSWLRKVVPPRSSPEMIRLRVET
Sbjct: 61 NRSWLRKVVPPRSSPEMIRLRVET 84

[Close]
BLAST of CsaV3_7G024300 vs. TrEMBL
Match: tr|A0A0A0K695|A0A0A0K695_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290570 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV 60
          MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV
Sbjct: 1  MSYEAAGKEARPTKMRSSKNLRRRRSGSSLGGPFVEEANAAASRGCLQFCYRKRMGMGWV 60

Query: 61 NRSWLRKVVPPRSSPEMIRLRVET 85
          NRSWLRKVVPPRSSPEMIRLRVET
Sbjct: 61 NRSWLRKVVPPRSSPEMIRLRVET 84

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44434.11.7e-39100.00hypothetical protein Csa_7G290570 [Cucumis sativus][more]
BLAST of CsaV3_7G024300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K695|A0A0A0K695_CUCSA1.1e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024300.1CsaV3_7G024300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G024300CSPI07G12290Wild cucumber (PI 183967)cpicucB414
CsaV3_7G024300CsGy7G011430Cucumber (Gy14) v2cgybcucB347
CsaV3_7G024300MELO3C023655Melon (DHL92) v3.5.1cucmeB540
CsaV3_7G024300MELO3C023655.2Melon (DHL92) v3.6.1cucmedB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024300Silver-seed gourdcarcucB0006
CsaV3_7G024300Cucumber (Gy14) v1cgycucB080
CsaV3_7G024300Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G024300Cucurbita maxima (Rimu)cmacucB0586
CsaV3_7G024300Cucurbita maxima (Rimu)cmacucB0599
CsaV3_7G024300Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G024300Cucurbita moschata (Rifu)cmocucB0039
CsaV3_7G024300Cucurbita moschata (Rifu)cmocucB0574
CsaV3_7G024300Cucurbita pepo (Zucchini)cpecucB0732
CsaV3_7G024300Cucurbita pepo (Zucchini)cpecucB0990
CsaV3_7G024300Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024300Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024300Watermelon (97103) v1cucwmB592
CsaV3_7G024300Watermelon (97103) v2cucwmbB593
CsaV3_7G024300Wax gourdcucwgoB733