CsaV3_7G024230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13238595 .. 13239053 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCGAGTGACCCTAGAATACTCGAACTGAATTTAAGGGTAAGCGGGTAATTTCACATAGTGTTAGACTTGAGGGGAAGACCTCTTATAATTGAGTTTAGGAAAAATGGGTCAGATTTCTTTTTCACTTGGAAAAAGAGCCATCAGTCAAAAAAAAGAAAAATAGAAAAACAACCCAAAAAAAGAACCTAATTTCATAACTTCTTCTCGCCGCCCCCTTTCTGTCTTTCTCGCCAGCGGCTACTCTGCAAACCCACAAGCAGGGCCGCTGACCATAGACTCCGTCCACCTGTCTTTGTGTATCACACCTGCGCCCTCTTGCTCAACCATCGACGGCGGTGGTTTGTTGTCGACAAAACCCACAGATATAGCTTGCGAAGCAGACCTGCTTCAGACGCTCTTGCCCAGACCTTCGCGATAACGTTTCTCTCCGTTTTCTACAAGTTTCAGCGCTGA

mRNA sequence

ATGCAATCGAGTGACCCTAGAATACTCGAACTGAATTTAAGGCGGCTACTCTGCAAACCCACAAGCAGGGCCGCTGACCATAGACTCCGTCCACCTGTCTTTGTGTATCACACCTGCGCCCTCTTGCTCAACCATCGACGGCGGTGGTTTGTTGTCGACAAAACCCACAGATATAGCTTGCGAAGCAGACCTGCTTCAGACGCTCTTGCCCAGACCTTCGCGATAACGTTTCTCTCCGTTTTCTACAAGTTTCAGCGCTGA

Coding sequence (CDS)

ATGCAATCGAGTGACCCTAGAATACTCGAACTGAATTTAAGGCGGCTACTCTGCAAACCCACAAGCAGGGCCGCTGACCATAGACTCCGTCCACCTGTCTTTGTGTATCACACCTGCGCCCTCTTGCTCAACCATCGACGGCGGTGGTTTGTTGTCGACAAAACCCACAGATATAGCTTGCGAAGCAGACCTGCTTCAGACGCTCTTGCCCAGACCTTCGCGATAACGTTTCTCTCCGTTTTCTACAAGTTTCAGCGCTGA

Protein sequence

MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSLRSRPASDALAQTFAITFLSVFYKFQR
Homology
[Close]
BLAST of CsaV3_7G024230 vs. NCBI nr
Match: KGN44426.1 (hypothetical protein Csa_7G290490 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL 60
          MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL
Sbjct: 1  MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL 60

Query: 61 RSRPASDALAQTFAITFLSVFYKFQR 87
          RSRPASDALAQTFAITFLSVFYKFQR
Sbjct: 61 RSRPASDALAQTFAITFLSVFYKFQR 86

[Close]
BLAST of CsaV3_7G024230 vs. TrEMBL
Match: tr|A0A0A0K9D6|A0A0A0K9D6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290490 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL 60
          MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL
Sbjct: 1  MQSSDPRILELNLRRLLCKPTSRAADHRLRPPVFVYHTCALLLNHRRRWFVVDKTHRYSL 60

Query: 61 RSRPASDALAQTFAITFLSVFYKFQR 87
          RSRPASDALAQTFAITFLSVFYKFQR
Sbjct: 61 RSRPASDALAQTFAITFLSVFYKFQR 86

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44426.18.5e-42100.00hypothetical protein Csa_7G290490 [Cucumis sativus][more]
BLAST of CsaV3_7G024230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9D6|A0A0A0K9D6_CUCSA5.6e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290490 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024230.1CsaV3_7G024230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024230Silver-seed gourdcarcucB0006
CsaV3_7G024230Cucumber (Gy14) v2cgybcucB347
CsaV3_7G024230Cucumber (Gy14) v1cgycucB080
CsaV3_7G024230Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G024230Cucurbita maxima (Rimu)cmacucB0586
CsaV3_7G024230Cucurbita maxima (Rimu)cmacucB0599
CsaV3_7G024230Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G024230Cucurbita moschata (Rifu)cmocucB0039
CsaV3_7G024230Cucurbita moschata (Rifu)cmocucB0574
CsaV3_7G024230Cucurbita pepo (Zucchini)cpecucB0732
CsaV3_7G024230Cucurbita pepo (Zucchini)cpecucB0990
CsaV3_7G024230Wild cucumber (PI 183967)cpicucB414
CsaV3_7G024230Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024230Melon (DHL92) v3.5.1cucmeB540
CsaV3_7G024230Melon (DHL92) v3.5.1cucmeB559
CsaV3_7G024230Melon (DHL92) v3.6.1cucmedB529
CsaV3_7G024230Melon (DHL92) v3.6.1cucmedB547
CsaV3_7G024230Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024230Watermelon (97103) v1cucwmB592
CsaV3_7G024230Watermelon (97103) v2cucwmbB593
CsaV3_7G024230Wax gourdcucwgoB733