CsaV3_7G024200 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G024200
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 13193039 .. 13193245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGGAAGAGGGCCAAAAGGGAAAAACGAAGTGTATGGAAAAAACAACCGTTGGAGATCTTGTGGAGTTTTGTGGGATCGTAGTAGTCCAAGACGATATGGAGACTGAGGAAATTTTTGATAACGAAGAGAGGATGTTTGTCGAGGATGGGAGAGAGAGTGACAATAGCAACGACAAGGACGGTGATAGTCTGAGGCTGTGA

mRNA sequence

ATGAGAGAGGAAGAGGGCCAAAAGGGAAAAACGAAGTGTATGGAAAAAACAACCGTTGGAGATCTTGTGGAGTTTTGTGGGATCGTAGTAGTCCAAGACGATATGGAGACTGAGGAAATTTTTGATAACGAAGAGAGGATGTTTGTCGAGGATGGGAGAGAGAGTGACAATAGCAACGACAAGGACGGTGATAGTCTGAGGCTGTGA

Coding sequence (CDS)

ATGAGAGAGGAAGAGGGCCAAAAGGGAAAAACGAAGTGTATGGAAAAAACAACCGTTGGAGATCTTGTGGAGTTTTGTGGGATCGTAGTAGTCCAAGACGATATGGAGACTGAGGAAATTTTTGATAACGAAGAGAGGATGTTTGTCGAGGATGGGAGAGAGAGTGACAATAGCAACGACAAGGACGGTGATAGTCTGAGGCTGTGA

Protein sequence

MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSLRL

Homology

[Close]

BLAST of CsaV3_7G024200 vs. NCBI nr
Match: KGN44423.1 (hypothetical protein Csa_7G290465 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND 60
          MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND
Sbjct: 1  MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND 60

Query: 61 KDGDSLRL 69
          KDGDSLRL
Sbjct: 61 KDGDSLRL 68

[Close]

BLAST of CsaV3_7G024200 vs. NCBI nr
Match: KGN54898.1 (hypothetical protein Csa_4G577370 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 67
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 69

[Close]

BLAST of CsaV3_7G024200 vs. TrEMBL
Match: tr|A0A0A0K4L9|A0A0A0K4L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND 60
          MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND
Sbjct: 1  MREEEGQKGKTKCMEKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSND 60

Query: 61 KDGDSLRL 69
          KDGDSLRL
Sbjct: 61 KDGDSLRL 68

[Close]

BLAST of CsaV3_7G024200 vs. TrEMBL
Match: tr|A0A0A0KZJ2|A0A0A0KZJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 67
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 69

The following BLAST results are available for this feature:

BLAST of CsaV3_7G024200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44423.1	6.5e-29	100.00	hypothetical protein Csa_7G290465 [Cucumis sativus]	[more]
KGN54898.1	5.2e-10	75.00	hypothetical protein Csa_4G577370 [Cucumis sativus]	[more]

BLAST of CsaV3_7G024200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G024200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G024200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4L9\|A0A0A0K4L9_CUCSA	4.3e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1	[more]
tr\|A0A0A0KZJ2\|A0A0A0KZJ2_CUCSA	3.4e-10	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G024200.1	CsaV3_7G024200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G024200	CSPI07G12190	Wild cucumber (PI 183967)	cpicucB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G024200	Watermelon (97103) v2	cucwmbB593
CsaV3_7G024200	Wax gourd	cucwgoB733
CsaV3_7G024200	Silver-seed gourd	carcucB0006
CsaV3_7G024200	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G024200	Cucumber (Gy14) v1	cgycucB080
CsaV3_7G024200	Cucurbita maxima (Rimu)	cmacucB0048
CsaV3_7G024200	Cucurbita maxima (Rimu)	cmacucB0586
CsaV3_7G024200	Cucurbita maxima (Rimu)	cmacucB0599
CsaV3_7G024200	Cucurbita moschata (Rifu)	cmocucB0034
CsaV3_7G024200	Cucurbita moschata (Rifu)	cmocucB0574
CsaV3_7G024200	Cucurbita pepo (Zucchini)	cpecucB0732
CsaV3_7G024200	Cucurbita pepo (Zucchini)	cpecucB0990
CsaV3_7G024200	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G024200	Melon (DHL92) v3.5.1	cucmeB540
CsaV3_7G024200	Melon (DHL92) v3.5.1	cucmeB559
CsaV3_7G024200	Melon (DHL92) v3.6.1	cucmedB529
CsaV3_7G024200	Melon (DHL92) v3.6.1	cucmedB547
CsaV3_7G024200	Watermelon (Charleston Gray)	cucwcgB547
CsaV3_7G024200	Watermelon (97103) v1	cucwmB592