CsaV3_7G024000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024000
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13007345 .. 13009859 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATGCGTCGGGTTCCTTCGGTATCAAAACCTATATAGGAAACTCTCGACTCTCGATGAAGCCATAATCATTCGTGGAAAGTAGGAGATCCATGCCGTTTCGGGCCAGAATGCGTCTAGTTCCTTCGATATCAGAAAATGCGTGGGGAACTCTCGACTCTTGGTCCGAGCTATACTATAATTGCACGTAAAAAGTAGAAGAGCCAAGCTGCTTCGAGCTAGAATGCGTCAAGTTTCTTTGGTATCAGAATCTGCTTTGCGAACTCTCGACTCTCAACTGAATGCAGAATACAATCAGTCGTAGAAAGGAGAGCCATGCCATTTCGTGGTAGAATGCGTCAGGTTCCTTCGGTATCAAAACTTTTGTGGGGAACTCTCGACTTTCGACATAAGCCACAATACAATCGCCCGTAGAAAGTAGGAGAGCCAAGCCGCTTGGATCCAGAATGCGTTAGGTTCCTTCGATATCAGAAATTGGGTAACTCTCGACTTTTGGCCGAAGCCACATTATAATCACCCATAGAACGTGTGCCAAGCCGCTTTGGGCTAGAATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGACCAAAGCCACGTTACAATCGCACTTAGAAAGTAGAAGCACCAAGATGTTTTGGGCCAGAATGAGTAAAGTTCCTTCGGTATCATAAGCTGCTTTGGGAACTCTAGACTCTCATCTGAAACTACAATACAATCACTCGTAGGTAGTAGGAGGGCCAAGCCGTTTCGTGCTAGAATGCGTTAGGTTCCTTCGGTATCAAAACCTTTGTAGGGAACTCTCGACTTTTGAATTAAGCGACAATACAATCGCTCTTAGAAAGTAGGAGTGCCAAGCCGCTTCGAGTCACATTGCGTCAGGTTTCTTCGGTATCAGAAACTACGTGGAGAACTCTCGATTCTTGGCTGAAGCCACATCAAAATCGCCTGTAGAAAGTAGGAGTGCCAAGTGTAACAGACATACTTATCCAGGGTGTGTTTACCTATGGCCGTATGCTTCAAATACCCCCGATTTATCTTATCTTTATGTCTTATATCTAGTTTAGGTATCTGCTTTCCATTTTAAGTCATGAAGCTTGGGTGTGACATTTCGACATTTTCATATGCAAGCCTATCAGACTTGAAAGTGTCCAAAATGTACTCTAGGGGGGAGACATACCAGTTGAATCCCCGTCCAACTAACAGTCTTTAATGCATATTGTAACGTCGATTTCAATGTATTTCTTTTTTTCTTTCGTTTTATAAACAAATTTCCCAAGAACGCAAATGAAGGTTACATCATCCGTCGACTTTGTCCACGATTTTTGGATTTTGATCGACTGACTTGTTCATCGAGTTAGAACAAGTGCCGCACAATCGTCCGTCTCGAGGTTGAAATGCTACGATTGTGGCACTAAGCCGCTTCAGGCTAGAATGCATCAAGTTCGTTTGGTATTATAAAATGCGTGGAGCTATATTACAATCGCCCGTACGAAGAATGAGAGCAAAGTCGATTAAGGCTAGAATGTATTGGGTTTCTTCTGTATTAAAACTGTGTGAACTCTGGACTCATGGCGGAAGCCACAATACAATTGCCCTAAGAAAGTAGAAGAGCCAAGCCGCTTTGGACAAGAATGCATCAGGTTGCACCGATATCAGAACCTACCTGGGGAACTCCCGACTCTCGCGTGAAGCCATAATCGCCCATAGAAAGTAGGATAGCCAAGTCGCTTCAGGCCAGAATGCATTAGATTCCCTCACTATTAGAAATTGTGTGCGAAACTCTTGACTCTTGGCCGAAGCCACAACAATTGCTCGTAGAAAGTGGGAGAGCCAAGTCACTTCGGGACAAAATGGGTTGGGTTCCTTCGATATTAGAAATTACATGGGGAACTCTCGACTCTTGGCCCAAGCCACATTACCATCGCCCATAGAAAGTAGGAGAGCCAAGCCAGTATAGGGAAGAATGCGTCGGGTTGCTTTGATATTATAAACTGCGTGGGGAGCTCTCGATTCTTGGCAAAAGCCACATATCAATCGTTCGTAGAAAGTAGGAGAGGCAAGCCACTTCTGGTTAGAATGGGTTAGGTTTCTTTGGTATTAGAAATTCCATGGGGAATTCTCGACTCTTAGCTCAAGCCACATTATCGTGGCCCATAGAAAGTAGGAGAGCCAAGCCGCTTGGGGTCAG

mRNA sequence

ATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGA

Coding sequence (CDS)

ATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGA

Protein sequence

MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS
Homology
[Close]
BLAST of CsaV3_7G024000 vs. NCBI nr
Match: KGN44400.1 (hypothetical protein Csa_7G279820 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60
           MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL
Sbjct: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60

Query: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 120
           HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS
Sbjct: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 119

[Close]
BLAST of CsaV3_7G024000 vs. TrEMBL
Match: tr|A0A0A0K3X8|A0A0A0K3X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.7e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60
           MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL
Sbjct: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60

Query: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 120
           HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS
Sbjct: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 119

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44400.11.5e-60100.00hypothetical protein Csa_7G279820 [Cucumis sativus][more]
BLAST of CsaV3_7G024000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3X8|A0A0A0K3X8_CUCSA9.7e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024000.1CsaV3_7G024000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024000Cucumber (Gy14) v2cgybcucB347
CsaV3_7G024000Cucumber (Gy14) v1cgycucB367
CsaV3_7G024000Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G024000Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G024000Wild cucumber (PI 183967)cpicucB414
CsaV3_7G024000Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024000Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024000Watermelon (97103) v1cucwmB592
CsaV3_7G024000Watermelon (97103) v2cucwmbB593
CsaV3_7G024000Wax gourdcucwgoB733