CsaV3_7G023990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13006080 .. 13006669 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTCTGACACTAAAGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGGTTTTGATACTGAAACAACCTGACGCATTCTAGCACGAAGAGGCTTGACACTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGATAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGAGTGATTGTATTGTGGCTTCAATTGAGAATAAAGAGTTCCCAAAGGAAATTCATACACCGAAGGAACTTGACGCATTCTGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTGA

mRNA sequence

AGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGACAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTG

Coding sequence (CDS)

AGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGACAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTG

Protein sequence

RNLSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGTX
Homology
[Close]
BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44399.1 (hypothetical protein Csa_7G279810 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 26  ENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 85
           E+R F  ++SSQRKFRYRRNLTH GPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD
Sbjct: 33  ESRFFHRIKSSQRKFRYRRNLTHSGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 92

Query: 86  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 130
           IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT
Sbjct: 93  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 136

[Close]
BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44403.1 (hypothetical protein Csa_7G279850 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 55/150 (36.67%), Postives = 67/150 (44.67%), Query Frame = 0 

Query: 3   LSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFR--------YRRNLTHFGPKQ- 62
           L+HS     ALLL  SDF V   ++R+F       +KF+        + R +   G  Q 
Sbjct: 354 LAHS---GFALLLSTSDFYVASAKSREFPMQFLIPKKFKPVAAWISYFLRAIMASGESQK 413

Query: 63  -----LGSPTFCDSL-----------------------------ALLLSASDCIVALVEN 110
                L SP F   L                             ALLLS SDC VA  ++
Sbjct: 414 FPTQRLRSPLFLGQLYCSFRRESRVLHTSFNIEGTRHILAWIGFALLLSTSDCNVASTKS 473

[Close]
BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44397.1 (hypothetical protein Csa_7G279790 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 70  SDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 110
           SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 189 SDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 228

[Close]
BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44394.1 (hypothetical protein Csa_7G279760 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 61  DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLR 108
           D LALLLS  +CIVA +E+REFP      KE +A   +  WLSYFLR
Sbjct: 8   DGLALLLSTGECIVASIESREFPTQALKLKEPNAFSPDVGWLSYFLR 54

[Close]
BLAST of CsaV3_7G023990 vs. TrEMBL
Match: tr|A0A0A0K653|A0A0A0K653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-47
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 26  ENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 85
           E+R F  ++SSQRKFRYRRNLTH GPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD
Sbjct: 33  ESRFFHRIKSSQRKFRYRRNLTHSGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 92

Query: 86  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 130
           IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT
Sbjct: 93  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 136

[Close]
BLAST of CsaV3_7G023990 vs. TrEMBL
Match: tr|A0A0A0K4J2|A0A0A0K4J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 55/150 (36.67%), Postives = 67/150 (44.67%), Query Frame = 0 

Query: 3   LSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFR--------YRRNLTHFGPKQ- 62
           L+HS     ALLL  SDF V   ++R+F       +KF+        + R +   G  Q 
Sbjct: 354 LAHS---GFALLLSTSDFYVASAKSREFPMQFLIPKKFKPVAAWISYFLRAIMASGESQK 413

Query: 63  -----LGSPTFCDSL-----------------------------ALLLSASDCIVALVEN 110
                L SP F   L                             ALLLS SDC VA  ++
Sbjct: 414 FPTQRLRSPLFLGQLYCSFRRESRVLHTSFNIEGTRHILAWIGFALLLSTSDCNVASTKS 473

[Close]
BLAST of CsaV3_7G023990 vs. TrEMBL
Match: tr|A0A0A0K7T2|A0A0A0K7T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 70  SDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 110
           SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 189 SDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 228

[Close]
BLAST of CsaV3_7G023990 vs. TrEMBL
Match: tr|A0A0A0K647|A0A0A0K647_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279760 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 61  DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLR 108
           D LALLLS  +CIVA +E+REFP      KE +A   +  WLSYFLR
Sbjct: 8   DGLALLLSTGECIVASIESREFPTQALKLKEPNAFSPDVGWLSYFLR 54

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44399.13.4e-4793.27hypothetical protein Csa_7G279810 [Cucumis sativus][more]
KGN44403.12.4e-0836.67hypothetical protein Csa_7G279850 [Cucumis sativus][more]
KGN44397.13.8e-0667.50hypothetical protein Csa_7G279790 [Cucumis sativus][more]
KGN44394.18.0e-0455.32hypothetical protein Csa_7G279760 [Cucumis sativus][more]
BLAST of CsaV3_7G023990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K653|A0A0A0K653_CUCSA2.3e-4793.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1[more]
tr|A0A0A0K4J2|A0A0A0K4J2_CUCSA1.6e-0836.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1[more]
tr|A0A0A0K7T2|A0A0A0K7T2_CUCSA2.5e-0667.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1[more]
tr|A0A0A0K647|A0A0A0K647_CUCSA5.3e-0455.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023990.1CsaV3_7G023990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G023990Cucumber (Gy14) v2cgybcucB347
CsaV3_7G023990Cucumber (Gy14) v1cgycucB367
CsaV3_7G023990Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G023990Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G023990Wild cucumber (PI 183967)cpicucB414
CsaV3_7G023990Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G023990Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G023990Watermelon (97103) v1cucwmB592
CsaV3_7G023990Watermelon (97103) v2cucwmbB593
CsaV3_7G023990Wax gourdcucwgoB733