CsaV3_7G023970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 13004061 .. 13005121 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCTGGCCTGAAGTGTCTTGATTCTGCTACATTCTATAGGTGATTGTAATCTGGCTTCGACCAAGAGTCGAGAGGTCCCCACATAGTTTCTAATACAAAAGAACCTGACGCATTCTAGCATGAATCAGCATCGCTCTCCTTCCTTCTAAGGGCGATTATAATGTGGCTTCAGCCAAGAGATGAGAGTTCCCCACGCAGTTTCTGATACCAAAGAAATTCAACGGATCCTGCCCAAAGCGACTTCACTCTCTTGCGTTCTACAAACGACTATGGCTTTGAGCGAGAGTCGAGAGTTCCCTATGCAAATTCTGATATCGATGGAACCTGATTCATTCTAACTCGAAGCGGTTTGGCTCTTCTACTTTCTACGATTGAATGTATTGTGGCTCCAGTCGAGAGTCAAGAGTTCCCCGCGCAGGCTCTCACACTTAAGGAACCCAACGCATTTTTTCTCCGAAGTGGCTTGGCTCTCTTACTTTCTTCGGGCGATGGTCATGAGGCTTGGGCTAAGAGTCGAGAGTTCCCCATGCAAATTCTAATATTTGGAACCTTATGCATTCTAGCCCGAAGCAGCTTGGCTCGCCTACGTTCTACGGGCAATGGTCATGTGGCTTGGGCCAAGACTCGAGAGTTCCCAAGCAATTTCTAATAACAAAGGAACCCGACCCATTCTAGTTGAAATGGCTTGACACTCGTACTCCCTTCGAACGATTGTTATATGGTTTTGGACAATAGTTAAGAGTTCCCCACGCAATTTCAAATAACGAAGGAATCCGACACATTCTAGCTCGAAACGACTTGATTCTCCTACTTTCTATAGGCGATTATGGCTTCAAGCGAGAGTCGAGAGTTCCTTACGTGGGTTCTGATATCGATGCAACCCACTTCATTCTAGTCAAAAGCAACTTGGCTCTCCTACTTTCTACGAGTGATTGTATTGAGGCTTCAATTTTGAGTCGAGAGTTCCCAAAGCGGATTCTGATACCTAAGGAACTTGACTCATTCTGGCCTGAAATGGCTTGGCTCTCCTACTTTCTACGTGTGATTGTAATGTAG

mRNA sequence

ATGCATTCTGGCCTGAAGTGTCTTGATTCTGCTACATTCTATAGCCAAGAGATGAGAGTTCCCCACGCAGTTTCTGATACCAAAGAAATTCAACGGATCCTGCCCAAAGCGACTTCACTCTCTTGCGTTCTACAAACGACTATGGCTTTGAGCGAGATCGAGAGTCAAGAGTTCCCCGCGCAGGCTCTCACACTTAAGGAACCCAACGCATTTTTTCTCCGAAGTGGCTTGGCTCTCTTACTTTCTTCGGGCGATGGTCATGAGGCTTGGGCTAAGAGTCGAGAGTTCCCCATGCAAATTCTAATATTTGGAACCTTATGCATTCTAGCCCGAAGCAGCTTGGCTCGCCTACGTTCTACGGGCAATGGTCATTTAAGAGTTCCCCACGCAATTTCAAATAACGAAGGAATCCGACACATTCTAGCTCGAAACGACTTGATTCTCCTACTTTCTATAGGCGATTATGGCTTCAAGCGAGAGTCGAGAGTTCCTTACGTGGGTTCTGATATCGATGCAACCCACTTCATTCTAGTCAAAAGCAACTTGGCTCTCCTACTTTCTACGAGTGATTGTATTGAGGCTTCAATTTTGAGTCGAGAGTTCCCAAAGCGGATTCTGATACCTAAGGAACTTGACTCATTCTGGCCTGAAATGGCTTGGCTCTCCTACTTTCTACGTGTGATTGTAATGTAG

Coding sequence (CDS)

ATGCATTCTGGCCTGAAGTGTCTTGATTCTGCTACATTCTATAGCCAAGAGATGAGAGTTCCCCACGCAGTTTCTGATACCAAAGAAATTCAACGGATCCTGCCCAAAGCGACTTCACTCTCTTGCGTTCTACAAACGACTATGGCTTTGAGCGAGATCGAGAGTCAAGAGTTCCCCGCGCAGGCTCTCACACTTAAGGAACCCAACGCATTTTTTCTCCGAAGTGGCTTGGCTCTCTTACTTTCTTCGGGCGATGGTCATGAGGCTTGGGCTAAGAGTCGAGAGTTCCCCATGCAAATTCTAATATTTGGAACCTTATGCATTCTAGCCCGAAGCAGCTTGGCTCGCCTACGTTCTACGGGCAATGGTCATTTAAGAGTTCCCCACGCAATTTCAAATAACGAAGGAATCCGACACATTCTAGCTCGAAACGACTTGATTCTCCTACTTTCTATAGGCGATTATGGCTTCAAGCGAGAGTCGAGAGTTCCTTACGTGGGTTCTGATATCGATGCAACCCACTTCATTCTAGTCAAAAGCAACTTGGCTCTCCTACTTTCTACGAGTGATTGTATTGAGGCTTCAATTTTGAGTCGAGAGTTCCCAAAGCGGATTCTGATACCTAAGGAACTTGACTCATTCTGGCCTGAAATGGCTTGGCTCTCCTACTTTCTACGTGTGATTGTAATGTAG

Protein sequence

MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPAQALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRSTGNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESRVPYVGSDIDATHFILVKSNLALLLSTSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM
Homology
[Close]
BLAST of CsaV3_7G023970 vs. NCBI nr
Match: KGN44397.1 (hypothetical protein Csa_7G279790 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 4.4e-106
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 

Query: 1   MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA 60
           MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA
Sbjct: 1   MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA 60

Query: 61  QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST 120
           QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST
Sbjct: 61  QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST 120

Query: 121 GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX 180
           GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX
Sbjct: 121 GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM 231
           XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM
Sbjct: 181 XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM 230

[Close]
BLAST of CsaV3_7G023970 vs. NCBI nr
Match: KGN44403.1 (hypothetical protein Csa_7G279850 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 9.8e-13
Identity = 71/216 (32.87%), Postives = 88/216 (40.74%), Query Frame = 0 

Query: 21  PHAVSDTKEIQRILPKATSLSCVLQTTMA-------LSEIESQEFPAQALTLKEPNAFFL 80
           P  V   KE   + PKA  LS  L+                  E P    ++        
Sbjct: 296 PTKVLIPKEPDALWPKAAWLSYFLRAIFMWLRPRGDYGFRRESEVPDAGSSIDATRCILA 355

Query: 81  RSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRSTGNGHLRVPHAISN 140
            SG ALLLS+ D + A AKSREFPMQ LI      +A      LR+           +++
Sbjct: 356 HSGFALLLSTSDFYVASAKSREFPMQFLIPKKFKPVAAWISYFLRA----------IMAS 415

Query: 141 NEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXXXXXXXXXXSDCIE 200
            E  +    R    L L      F+RES                           SDC  
Sbjct: 416 GESQKFPTQRLRSPLFLGQLYCSFRRESRVLHTSFNIEGTRHILAWIGFALLLSTSDCNV 475

Query: 201 ASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIV 230
           AS  SREFP ++LIPKE D+ WP+ AWLSYFLR IV
Sbjct: 476 ASTKSREFPTKVLIPKEPDALWPKAAWLSYFLRAIV 501

[Close]
BLAST of CsaV3_7G023970 vs. NCBI nr
Match: KGN44050.1 (hypothetical protein Csa_7G140940 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 48/151 (31.79%), Postives = 71/151 (47.02%), Query Frame = 0 

Query: 14  YSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPAQALTLKEPNAFFL 73
           + +E+RVP+   D    + IL ++     + +    ++ +ES+EF  Q LTLKEPN F L
Sbjct: 88  FGRELRVPYENFDNNGTRCILARSGLALLISRGEFIVASVESREFNTQDLTLKEPNTFLL 147

Query: 74  RSGLALLLSSGDGHEAWAKS----REFPMQILIFGTLCILARSSLARLRSTGNGHLRVPH 133
                          AW+ +    +           LC   + S            RV H
Sbjct: 148 -------------EVAWSPTHSGLKRLGSLTFYLRFLCCFGQES------------RVLH 207

Query: 134 AISNNEGIRHILARNDLILLLSIGDYGFKRE 161
            +S+ E I+ ILA++DL LLLS GDYGF+RE
Sbjct: 208 TVSHIERIQCILAQSDLALLLSKGDYGFRRE 213

[Close]
BLAST of CsaV3_7G023970 vs. NCBI nr
Match: KGN44399.1 (hypothetical protein Csa_7G279810 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 189 SDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 229
           SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 77  SDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 116

[Close]
BLAST of CsaV3_7G023970 vs. NCBI nr
Match: KGN44395.1 (hypothetical protein Csa_7G279770 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 49/140 (35.00%), Postives = 62/140 (44.29%), Query Frame = 0 

Query: 90  WAKSR--EFPMQILIFGTLCILARSSLARLRSTGN-GHLRVPHAISNNEGIRHILARNDL 149
           W +SR    P    I  T  ILARSSLA L  TG+         +   +   HI+A++DL
Sbjct: 2   WLRSRVESSPRSSNIQRTQSILARSSLALLPFTGDFNQASSAMQVRGPKRTLHIMAQSDL 61

Query: 150 ILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXXXXXXXXXXSDCIEASILSREFPKRIL 209
           +LLLS   Y F                               S CI A   SREF  + L
Sbjct: 62  VLLLSTTGYAF-----------------------------GESVCIVALAESREFNTQDL 112

Query: 210 IPKELDSFWPEMAWLSYFLR 227
             KE D+F+ ++AWLSYFLR
Sbjct: 122 TLKEPDAFFTKVAWLSYFLR 112

[Close]
BLAST of CsaV3_7G023970 vs. TrEMBL
Match: tr|A0A0A0K7T2|A0A0A0K7T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 2.9e-106
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 

Query: 1   MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA 60
           MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA
Sbjct: 1   MHSGLKCLDSATFYSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPA 60

Query: 61  QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST 120
           QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST
Sbjct: 61  QALTLKEPNAFFLRSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRST 120

Query: 121 GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX 180
           GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX
Sbjct: 121 GNGHLRVPHAISNNEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM 231
           XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM
Sbjct: 181 XXXXXXXXSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIVM 230

[Close]
BLAST of CsaV3_7G023970 vs. TrEMBL
Match: tr|A0A0A0K4J2|A0A0A0K4J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.5e-13
Identity = 71/216 (32.87%), Postives = 88/216 (40.74%), Query Frame = 0 

Query: 21  PHAVSDTKEIQRILPKATSLSCVLQTTMA-------LSEIESQEFPAQALTLKEPNAFFL 80
           P  V   KE   + PKA  LS  L+                  E P    ++        
Sbjct: 296 PTKVLIPKEPDALWPKAAWLSYFLRAIFMWLRPRGDYGFRRESEVPDAGSSIDATRCILA 355

Query: 81  RSGLALLLSSGDGHEAWAKSREFPMQILIFGTLCILARSSLARLRSTGNGHLRVPHAISN 140
            SG ALLLS+ D + A AKSREFPMQ LI      +A      LR+           +++
Sbjct: 356 HSGFALLLSTSDFYVASAKSREFPMQFLIPKKFKPVAAWISYFLRA----------IMAS 415

Query: 141 NEGIRHILARNDLILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXXXXXXXXXXSDCIE 200
            E  +    R    L L      F+RES                           SDC  
Sbjct: 416 GESQKFPTQRLRSPLFLGQLYCSFRRESRVLHTSFNIEGTRHILAWIGFALLLSTSDCNV 475

Query: 201 ASILSREFPKRILIPKELDSFWPEMAWLSYFLRVIV 230
           AS  SREFP ++LIPKE D+ WP+ AWLSYFLR IV
Sbjct: 476 ASTKSREFPTKVLIPKEPDALWPKAAWLSYFLRAIV 501

[Close]
BLAST of CsaV3_7G023970 vs. TrEMBL
Match: tr|A0A0A0K328|A0A0A0K328_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G140940 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 48/151 (31.79%), Postives = 71/151 (47.02%), Query Frame = 0 

Query: 14  YSQEMRVPHAVSDTKEIQRILPKATSLSCVLQTTMALSEIESQEFPAQALTLKEPNAFFL 73
           + +E+RVP+   D    + IL ++     + +    ++ +ES+EF  Q LTLKEPN F L
Sbjct: 88  FGRELRVPYENFDNNGTRCILARSGLALLISRGEFIVASVESREFNTQDLTLKEPNTFLL 147

Query: 74  RSGLALLLSSGDGHEAWAKS----REFPMQILIFGTLCILARSSLARLRSTGNGHLRVPH 133
                          AW+ +    +           LC   + S            RV H
Sbjct: 148 -------------EVAWSPTHSGLKRLGSLTFYLRFLCCFGQES------------RVLH 207

Query: 134 AISNNEGIRHILARNDLILLLSIGDYGFKRE 161
            +S+ E I+ ILA++DL LLLS GDYGF+RE
Sbjct: 208 TVSHIERIQCILAQSDLALLLSKGDYGFRRE 213

[Close]
BLAST of CsaV3_7G023970 vs. TrEMBL
Match: tr|A0A0A0K653|A0A0A0K653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 189 SDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 229
           SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 77  SDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 116

[Close]
BLAST of CsaV3_7G023970 vs. TrEMBL
Match: tr|A0A0A0K3X3|A0A0A0K3X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279770 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 49/140 (35.00%), Postives = 62/140 (44.29%), Query Frame = 0 

Query: 90  WAKSR--EFPMQILIFGTLCILARSSLARLRSTGN-GHLRVPHAISNNEGIRHILARNDL 149
           W +SR    P    I  T  ILARSSLA L  TG+         +   +   HI+A++DL
Sbjct: 2   WLRSRVESSPRSSNIQRTQSILARSSLALLPFTGDFNQASSAMQVRGPKRTLHIMAQSDL 61

Query: 150 ILLLSIGDYGFKRESXXXXXXXXXXXXXXXXXXXXXXXXXXXSDCIEASILSREFPKRIL 209
           +LLLS   Y F                               S CI A   SREF  + L
Sbjct: 62  VLLLSTTGYAF-----------------------------GESVCIVALAESREFNTQDL 112

Query: 210 IPKELDSFWPEMAWLSYFLR 227
             KE D+F+ ++AWLSYFLR
Sbjct: 122 TLKEPDAFFTKVAWLSYFLR 112

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44397.14.4e-106100.00hypothetical protein Csa_7G279790 [Cucumis sativus][more]
KGN44403.19.8e-1332.87hypothetical protein Csa_7G279850 [Cucumis sativus][more]
KGN44050.11.6e-0731.79hypothetical protein Csa_7G140940 [Cucumis sativus][more]
KGN44399.14.0e-0667.50hypothetical protein Csa_7G279810 [Cucumis sativus][more]
KGN44395.13.4e-0535.00hypothetical protein Csa_7G279770 [Cucumis sativus][more]
BLAST of CsaV3_7G023970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7T2|A0A0A0K7T2_CUCSA2.9e-106100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1[more]
tr|A0A0A0K4J2|A0A0A0K4J2_CUCSA6.5e-1332.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1[more]
tr|A0A0A0K328|A0A0A0K328_CUCSA1.1e-0731.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G140940 PE=4 SV=1[more]
tr|A0A0A0K653|A0A0A0K653_CUCSA2.6e-0667.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1[more]
tr|A0A0A0K3X3|A0A0A0K3X3_CUCSA2.2e-0535.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279770 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023970.1CsaV3_7G023970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G023970Cucumber (Gy14) v2cgybcucB347
CsaV3_7G023970Cucumber (Gy14) v1cgycucB367
CsaV3_7G023970Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G023970Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G023970Wild cucumber (PI 183967)cpicucB414
CsaV3_7G023970Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G023970Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G023970Watermelon (97103) v1cucwmB592
CsaV3_7G023970Watermelon (97103) v2cucwmbB593
CsaV3_7G023970Wax gourdcucwgoB733