CsaV3_7G022100 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G022100
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 10914700 .. 10914849 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

mRNA sequence

ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

Coding sequence (CDS)

ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

Protein sequence

MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL

Homology

[Close]

BLAST of CsaV3_7G022100 vs. NCBI nr
Match: KGN44192.1 (hypothetical protein Csa_7G219280 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 51
          MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL
Sbjct: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 50

[Close]

BLAST of CsaV3_7G022100 vs. TrEMBL
Match: tr|A0A0A0K798|A0A0A0K798_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219280 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 51
          MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL
Sbjct: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 50

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44192.1	4.0e-20	100.00	hypothetical protein Csa_7G219280 [Cucumis sativus]	[more]

BLAST of CsaV3_7G022100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K798\|A0A0A0K798_CUCSA	2.6e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G022100.1	CsaV3_7G022100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G022100	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G022100	Cucumber (Gy14) v1	cgycucB229
CsaV3_7G022100	Cucurbita maxima (Rimu)	cmacucB0590
CsaV3_7G022100	Cucurbita moschata (Rifu)	cmocucB0579
CsaV3_7G022100	Wild cucumber (PI 183967)	cpicucB414