CsaV3_7G022090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G022090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 10914282 .. 10914646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCATAAGTGAGCGGGTGGCTAATAGGGCTTCACATGATGTGATACCACGCATCATGCAATGGAGTTGCACTTACTCACTTGGGTTAAAGGTGATTGAGTCACATGTCTTTGGGTCCCAAATGGGTTGTCTTGGTTTCTTTTGTTCTTCCACCTTCACTTTAGGGTTTAAGGTTTAATAACTAATAATTAATGGTTTATGTTTCAAATTCAGATATGTATGCAAGCAATTGAGCCAACACATGAAGAGCTTGCATACCTAGATACGGGTCTTGATATCCCTTCTACAGAAGGCTACAAAGATAACCTCGATGCTCCTCTTCGAGACGATGATGCTCCATCATTCAATCCTCATGCATAG

mRNA sequence

ATGTCATCCATAAGTGAGCGGGTGGCTAATAGGGCTTCACATGATGTGATACCACGCATCATGCAATGGAGTTGCACTTACTCACTTGGGTTAAAGATATGTATGCAAGCAATTGAGCCAACACATGAAGAGCTTGCATACCTAGATACGGGTCTTGATATCCCTTCTACAGAAGGCTACAAAGATAACCTCGATGCTCCTCTTCGAGACGATGATGCTCCATCATTCAATCCTCATGCATAG

Coding sequence (CDS)

ATGTCATCCATAAGTGAGCGGGTGGCTAATAGGGCTTCACATGATGTGATACCACGCATCATGCAATGGAGTTGCACTTACTCACTTGGGTTAAAGATATGTATGCAAGCAATTGAGCCAACACATGAAGAGCTTGCATACCTAGATACGGGTCTTGATATCCCTTCTACAGAAGGCTACAAAGATAACCTCGATGCTCCTCTTCGAGACGATGATGCTCCATCATTCAATCCTCATGCATAG

Protein sequence

MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGYKDNLDAPLRDDDAPSFNPHA

Homology

[Close]

BLAST of CsaV3_7G022090 vs. NCBI nr
Match: KGN44191.1 (hypothetical protein Csa_7G219270 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY 60
          MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY
Sbjct: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY 60

Query: 61 KDNLDAPLRDDDAPSFNPHA 81
          KDNLDAPLRDDDAPSFNPHA
Sbjct: 61 KDNLDAPLRDDDAPSFNPHA 80

[Close]

BLAST of CsaV3_7G022090 vs. TrEMBL
Match: tr|A0A0A0K8S4|A0A0A0K8S4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219270 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY 60
          MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY
Sbjct: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKICMQAIEPTHEELAYLDTGLDIPSTEGY 60

Query: 61 KDNLDAPLRDDDAPSFNPHA 81
          KDNLDAPLRDDDAPSFNPHA
Sbjct: 61 KDNLDAPLRDDDAPSFNPHA 80

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44191.1	3.7e-39	100.00	hypothetical protein Csa_7G219270 [Cucumis sativus]	[more]

BLAST of CsaV3_7G022090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8S4\|A0A0A0K8S4_CUCSA	2.4e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219270 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G022090.1	CsaV3_7G022090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G022090	CSPI07G10070	Wild cucumber (PI 183967)	cpicucB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G022090	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G022090	Cucumber (Gy14) v1	cgycucB229
CsaV3_7G022090	Cucurbita maxima (Rimu)	cmacucB0590
CsaV3_7G022090	Cucurbita moschata (Rifu)	cmocucB0579