CsaV3_7G020970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G020970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7 : 9304772 .. 9304998 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

mRNA sequence

ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Protein sequence

MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILX
Homology
[Close]
BLAST of CsaV3_7G020970 vs. NCBI nr
Match: BAF22809.1 (Os08g0125300 [Oryza sativa Japonica Group] >BAG92574.1 unnamed protein product [Oryza sativa Japonica Group] >BAT03649.1 Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]
BLAST of CsaV3_7G020970 vs. NCBI nr
Match: EEC84282.1 (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]
BLAST of CsaV3_7G020970 vs. NCBI nr
Match: ABF94034.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M +CN+   P++P++QL KD E  P+DATEYR I +  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRI-IGSLRYLLHTRPDLSYAVGVASRFM 1214

Query: 61   ERPTTMHYKVVKQIL 76
            ERPT MH+K VKQIL
Sbjct: 1215 ERPTVMHFKAVKQIL 1228

[Close]
BLAST of CsaV3_7G020970 vs. NCBI nr
Match: XP_020249213.1 (uncharacterized protein LOC109826599 [Asparagus officinalis])

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M++CN TKYPMEPK QL KD     ++ TEYR  V+  L YL +TRPDLSY VG+ SRYM
Sbjct: 91  MSECNPTKYPMEPKLQLGKDVNGTLVNPTEYRR-VIGCLRYLTHTRPDLSYSVGLVSRYM 150

Query: 61  ERPTTMHYKVVKQIL 76
           ERPTTMH++ VKQIL
Sbjct: 151 ERPTTMHHQAVKQIL 164

[Close]
BLAST of CsaV3_7G020970 vs. NCBI nr
Match: CAE04421.2 (OSJNBb0040D15.11 [Oryza sativa Japonica Group])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DCN+T  P+E ++QLHKD E + +D TEYR + +  L YLL+TRPDLSY VG+ SR+M
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRL-IGCLRYLLHTRPDLSYAVGVVSRFM 154

Query: 61  ERPTTMHYKVVKQIL 76
           ERPT MH+K +KQIL
Sbjct: 155 ERPTVMHFKALKQIL 168

[Close]
BLAST of CsaV3_7G020970 vs. TAIR10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 7.9e-06
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DC     P+  K      T + P D +++RSI V  L YL  TRPD+SY V +  + M
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI-VGALQYLTLTRPDISYAVNIVCQRM 130

Query: 61  ERPTTMHYKVVKQIL 76
             PT   + ++K++L
Sbjct: 131 HEPTLADFDLLKRVL 143

[Close]
BLAST of CsaV3_7G020970 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-07
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0 

Query: 6    ATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTT 65
            AT     PK  LH  T+    D TEYR I V  L YL  TRPDLSY V   S+YM  PT 
Sbjct: 1205 ATPMATSPKLTLHSGTKLP--DPTEYRGI-VGSLQYLAFTRPDLSYAVNRLSQYMHMPTD 1264

Query: 66   MHYKVVKQIL 76
             H+  +K++L
Sbjct: 1265 DHWNALKRVL 1271

[Close]
BLAST of CsaV3_7G020970 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0 

Query: 10   PMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTTMHYK 69
            PM P  +L   +     D TEYR I V  L YL  TRPD+SY V   S++M  PT  H +
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGI-VGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQ 1283

Query: 70   VVKQIL 76
             +K+IL
Sbjct: 1284 ALKRIL 1288

[Close]
BLAST of CsaV3_7G020970 vs. Swiss-Prot
Match: sp|P92519|M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DC     P+  K      T + P D +++RSI V  L YL  TRPD+SY V +  + M
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI-VGALQYLTLTRPDISYAVNIVCQRM 130

Query: 61  ERPTTMHYKVVKQIL 76
             PT   + ++K++L
Sbjct: 131 HEPTLADFDLLKRVL 143

[Close]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match: tr|A0A0A9FJ50|A0A0A9FJ50_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M D N TKYPME KAQ+HKD++  P+DATEYR  VV  L YLL+TRPDLS+ VG+ASR+M
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRR-VVGCLRYLLHTRPDLSHAVGVASRHM 140

Query: 61  ERPTTMHYKVVKQIL 76
           ERPT MH K+VKQ+L
Sbjct: 141 ERPTVMHQKLVKQML 154

[Close]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match: tr|Q0J8A6|Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match: tr|B8BDZ6|B8BDZ6_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match: tr|Q10RM4|Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M +CN+   P++P++QL KD E  P+DATEYR I +  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRI-IGSLRYLLHTRPDLSYAVGVASRFM 1214

Query: 61   ERPTTMHYKVVKQIL 76
            ERPT MH+K VKQIL
Sbjct: 1215 ERPTVMHFKAVKQIL 1228

[Close]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match: tr|Q7XMW3|Q7XMW3_ORYSJ (OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0040D15.11 PE=4 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DCN+T  P+E ++QLHKD E + +D TEYR + +  L YLL+TRPDLSY VG+ SR+M
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRL-IGCLRYLLHTRPDLSYAVGVVSRFM 154

Query: 61  ERPTTMHYKVVKQIL 76
           ERPT MH+K +KQIL
Sbjct: 155 ERPTVMHFKALKQIL 168

The following BLAST results are available for this feature:
BLAST of CsaV3_7G020970 vs. NCBI nr
Match NameE-valueIdentityDescription
BAF22809.15.7e-1866.67Os08g0125300 [Oryza sativa Japonica Group] >BAG92574.1 unnamed protein product [... [more]
EEC84282.15.7e-1866.67hypothetical protein OsI_30754 [Oryza sativa Indica Group][more]
ABF94034.11.7e-1762.67retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
XP_020249213.13.7e-1764.00uncharacterized protein LOC109826599 [Asparagus officinalis][more]
CAE04421.26.3e-1760.00OSJNBb0040D15.11 [Oryza sativa Japonica Group][more]
BLAST of CsaV3_7G020970 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00810.17.9e-0636.00DNA/RNA polymerases superfamily protein[more]
BLAST of CsaV3_7G020970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZT94|POLR2_ARATH6.9e-0747.14Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
sp|Q94HW2|POLR1_ARATH1.7e-0543.94Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
sp|P92519|M810_ARATH1.4e-0436.00Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of CsaV3_7G020970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A9FJ50|A0A0A9FJ50_ARUDO1.3e-1868.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|Q0J8A6|Q0J8A6_ORYSJ3.8e-1866.67Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE... [more]
tr|B8BDZ6|B8BDZ6_ORYSI3.8e-1866.67Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4... [more]
tr|Q10RM4|Q10RM4_ORYSJ1.1e-1762.67Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
tr|Q7XMW3|Q7XMW3_ORYSJ4.2e-1760.00OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0040D... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G020970.1CsaV3_7G020970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..75
NoneNo IPR availablePANTHERPTHR11439:SF204SUBFAMILY NOT NAMEDcoord: 1..75

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G020970Silver-seed gourdcarcucB0923
CsaV3_7G020970Silver-seed gourdcarcucB0924
CsaV3_7G020970Silver-seed gourdcarcucB0946
CsaV3_7G020970Cucumber (Gy14) v2cgybcucB347
CsaV3_7G020970Cucurbita maxima (Rimu)cmacucB0051
CsaV3_7G020970Cucurbita maxima (Rimu)cmacucB0052
CsaV3_7G020970Cucurbita maxima (Rimu)cmacucB0585
CsaV3_7G020970Cucurbita maxima (Rimu)cmacucB0600
CsaV3_7G020970Cucurbita moschata (Rifu)cmocucB0037
CsaV3_7G020970Cucurbita moschata (Rifu)cmocucB0038
CsaV3_7G020970Cucurbita moschata (Rifu)cmocucB0575
CsaV3_7G020970Cucurbita moschata (Rifu)cmocucB0586
CsaV3_7G020970Cucurbita pepo (Zucchini)cpecucB0731
CsaV3_7G020970Cucurbita pepo (Zucchini)cpecucB0733
CsaV3_7G020970Cucurbita pepo (Zucchini)cpecucB0991
CsaV3_7G020970Wild cucumber (PI 183967)cpicucB414
CsaV3_7G020970Wild cucumber (PI 183967)cpicucB416
CsaV3_7G020970Bottle gourd (USVL1VR-Ls)cuclsiB539
CsaV3_7G020970Bottle gourd (USVL1VR-Ls)cuclsiB547
CsaV3_7G020970Melon (DHL92) v3.5.1cucmeB541
CsaV3_7G020970Melon (DHL92) v3.5.1cucmeB563
CsaV3_7G020970Melon (DHL92) v3.6.1cucmedB528
CsaV3_7G020970Melon (DHL92) v3.6.1cucmedB549
CsaV3_7G020970Watermelon (Charleston Gray)cucwcgB543
CsaV3_7G020970Watermelon (Charleston Gray)cucwcgB554
CsaV3_7G020970Watermelon (97103) v1cucwmB589
CsaV3_7G020970Watermelon (97103) v1cucwmB600
CsaV3_7G020970Watermelon (97103) v2cucwmbB589
CsaV3_7G020970Watermelon (97103) v2cucwmbB600
CsaV3_7G020970Wax gourdcucwgoB723