CsaV3_7G019870 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G019870
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2
Location	chr7 : 9120943 .. 9121545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAAGTTTCTGATAAGGAAAAGAGTTCTGATTTGTCGACGCATAGGCAACAAGAGGACTCAGGAATGGGAAAAGGTTCCGATATATCAATGCCTAAGCAATTGGAGTCAGAAAAAGGCGTAAGGTCTAAAACTTCAGCTAATGATATTCATGAAAAAGAATCTACTATACTAGCACCAGATGAACCAGAAGATTCAAAGAGCGAATCATTTGTCTCTGGAGTTCCTAAAAATGGATCCACGAAAACATGGAAGAGAGATAGTGACAGAGAGAGTCATGACAATCGGGATATCCATCCTAATCTGTCTCCTGAGGCTCCAAGGAAGAAGAGGCAGCGTTTTGAAGAAATACCTCGAAGAGGTGATGGTGAGACATCAGAAGAGAGCAGACGTAATTGTAAAAGGCCTTTAACTGAGATTAAACAGAGACCTCCTGCTTCTCCAAATGTGAGTGATCATACATCCAGTAAGTCAGTTGAGATGCCTCCATATGCTGATGTGGATGGGATTGGACATCATCAACAGTCGGGGTCGACTATGACTGAGCCAAAACACCAACCTCGGAGCTCCTTACGATGCTGCACAGATCAGCTTAACTGA

mRNA sequence

ATGGTAAAAGTTTCTGATAAGGAAAAGAGTTCTGATTTGTCGACGCATAGGCAACAAGAGGACTCAGGAATGGGAAAAGGTTCCGATATATCAATGCCTAAGCAATTGGAGTCAGAAAAAGGCGTAAGGTCTAAAACTTCAGCTAATGATATTCATGAAAAAGAATCTACTATACTAGCACCAGATGAACCAGAAGATTCAAAGAGCGAATCATTTGTCTCTGGAGTTCCTAAAAATGGATCCACGAAAACATGGAAGAGAGATAGTGACAGAGAGAGTCATGACAATCGGGATATCCATCCTAATCTGTCTCCTGAGGCTCCAAGGAAGAAGAGGCAGCGTTTTGAAGAAATACCTCGAAGAGGTGATGGTGAGACATCAGAAGAGAGCAGACGTAATTGTAAAAGGCCTTTAACTGAGATTAAACAGAGACCTCCTGCTTCTCCAAATGTGAGTGATCATACATCCAGTAAGTCAGTTGAGATGCCTCCATATGCTGATGTGGATGGGATTGGACATCATCAACAGTCGGGGTCGACTATGACTGAGCCAAAACACCAACCTCGGAGCTCCTTACGATGCTGCACAGATCAGCTTAACTGA

Coding sequence (CDS)

ATGGTAAAAGTTTCTGATAAGGAAAAGAGTTCTGATTTGTCGACGCATAGGCAACAAGAGGACTCAGGAATGGGAAAAGGTTCCGATATATCAATGCCTAAGCAATTGGAGTCAGAAAAAGGCGTAAGGTCTAAAACTTCAGCTAATGATATTCATGAAAAAGAATCTACTATACTAGCACCAGATGAACCAGAAGATTCAAAGAGCGAATCATTTGTCTCTGGAGTTCCTAAAAATGGATCCACGAAAACATGGAAGAGAGATAGTGACAGAGAGAGTCATGACAATCGGGATATCCATCCTAATCTGTCTCCTGAGGCTCCAAGGAAGAAGAGGCAGCGTTTTGAAGAAATACCTCGAAGAGGTGATGGTGAGACATCAGAAGAGAGCAGACGTAATTGTAAAAGGCCTTTAACTGAGATTAAACAGAGACCTCCTGCTTCTCCAAATGTGAGTGATCATACATCCAGTAAGTCAGTTGAGATGCCTCCATATGCTGATGTGGATGGGATTGGACATCATCAACAGTCGGGGTCGACTATGACTGAGCCAAAACACCAACCTCGGAGCTCCTTACGATGCTGCACAGATCAGCTTAACTGA

Protein sequence

MVKVSDKEKSSDLSTHRQQEDSGMGKGSDISMPKQLESEKGVRSKTSANDIHEKESTILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRESHDNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVSDHTSSKSVEMPPYADVDGIGHHQQSGSTMTEPKHQPRSSLRCCTDQLN

Homology

[Close]

BLAST of CsaV3_7G019870 vs. NCBI nr
Match: XP_008447701.2 (PREDICTED: LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 39   EKGVRSKTSANDIH------EKESTILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRE 98
            EKG+RSKTSAN IH       K+S ILAPDE EDSKS S VS VPK+ STKT KRDSDRE
Sbjct: 985  EKGLRSKTSANHIHLHETLLIKDSIILAPDEAEDSKSGSVVSEVPKSESTKTSKRDSDRE 1044

Query: 99   SHDNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVS 158
            SHDN D+HPN+SPEAPRKKRQRFEEIPR+GDGETSEESRR+CKRPL EIKQRP ASPN S
Sbjct: 1045 SHDNWDVHPNMSPEAPRKKRQRFEEIPRKGDGETSEESRRDCKRPLNEIKQRPRASPNAS 1104

Query: 159  DHTSSKSVEMPPYADVDGIGHHQQSGSTMTEP 185
            DHTS+KSVEMP +A VDGIG HQQ GSTMTEP
Sbjct: 1105 DHTSNKSVEMPSHAVVDGIG-HQQLGSTMTEP 1135

[Close]

BLAST of CsaV3_7G019870 vs. NCBI nr
Match: XP_022139427.1 (protein ENHANCED DOWNY MILDEW 2 [Momordica charantia] >XP_022139428.1 protein ENHANCED DOWNY MILDEW 2 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 92/150 (61.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 39   EKGVRSKTSANDIHEKESTILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRESHDNRD 98
            EKG RSKTS + IH  + T+LA DEPE S++ S VS V K+GS+KT KRDSDRESHD+R+
Sbjct: 953  EKGQRSKTSDDHIHVSD-TLLA-DEPEGSRNGSVVSEVHKSGSSKTTKRDSDRESHDSRE 1012

Query: 99   IHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRP-LTEIKQRPPASPNVSDHT-- 158
               NLSPEAP  KR+RFE   RRG+GE+SEES R+ K+P L EI Q P ASPNVSDH   
Sbjct: 1013 HRTNLSPEAP-SKRKRFEGKARRGEGESSEESTRDVKKPSLNEIYQGPHASPNVSDHKYS 1072

Query: 159  ----SSKSVEMPPYADVDGIGHHQQSGSTM 182
                 SKSVEMPP+ +V  IG HQQ G TM
Sbjct: 1073 LDGFLSKSVEMPPFTEVGVIG-HQQMGLTM 1098

[Close]

BLAST of CsaV3_7G019870 vs. NCBI nr
Match: XP_022981352.1 (protein ENHANCED DOWNY MILDEW 2 isoform X1 [Cucurbita maxima] >XP_022981353.1 protein ENHANCED DOWNY MILDEW 2 isoform X1 [Cucurbita maxima] >XP_022981354.1 protein ENHANCED DOWNY MILDEW 2 isoform X1 [Cucurbita maxima] >XP_022981355.1 protein ENHANCED DOWNY MILDEW 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 87/146 (59.59%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 39   EKGVRSKTSANDIHEKES----TILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRESH 98
            EKG  SKTS + IH  ++    ++++ DEPEDSKS S    V KNGS K  KRD+DRESH
Sbjct: 952  EKGRSSKTSDDHIHLNDTFLLESVMSADEPEDSKSGSVSCDVHKNGSMKASKRDNDRESH 1011

Query: 99   DNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVSDH 158
            D+RD   NLSPEAPR KRQRFEEIPRRGDGETSEESRR+ KRP          SPNVSD 
Sbjct: 1012 DSRDRRTNLSPEAPR-KRQRFEEIPRRGDGETSEESRRDGKRP----------SPNVSDR 1071

Query: 159  TSSKSVEMPPYADVDGIGHHQQSGST 181
             SS +  +   ++V GIG HQQSGST
Sbjct: 1072 RSSLA-GLLSSSEVGGIG-HQQSGST 1084

[Close]

BLAST of CsaV3_7G019870 vs. NCBI nr
Match: XP_022981356.1 (protein ENHANCED DOWNY MILDEW 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 87/146 (59.59%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 39  EKGVRSKTSANDIHEKES----TILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRESH 98
           EKG  SKTS + IH  ++    ++++ DEPEDSKS S    V KNGS K  KRD+DRESH
Sbjct: 712 EKGRSSKTSDDHIHLNDTFLLESVMSADEPEDSKSGSVSCDVHKNGSMKASKRDNDRESH 771

Query: 99  DNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVSDH 158
           D+RD   NLSPEAPR KRQRFEEIPRRGDGETSEESRR+ KRP          SPNVSD 
Sbjct: 772 DSRDRRTNLSPEAPR-KRQRFEEIPRRGDGETSEESRRDGKRP----------SPNVSDR 831

Query: 159 TSSKSVEMPPYADVDGIGHHQQSGST 181
            SS +  +   ++V GIG HQQSGST
Sbjct: 832 RSSLA-GLLSSSEVGGIG-HQQSGST 844

[Close]

BLAST of CsaV3_7G019870 vs. NCBI nr
Match: XP_022940346.1 (protein ENHANCED DOWNY MILDEW 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 8.8e-26
Identity = 87/146 (59.59%), Postives = 100/146 (68.49%), Query Frame = 0


Query: 39  EKGVRSKTSANDIHEKES----TILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRESH 98
           EKG  SKTS + IH  ++    +++  DEPEDSKS S    V KNGS K  KRD+DRESH
Sbjct: 712 EKGRSSKTSDDHIHLNDTFLLESVMPADEPEDSKSGSVSCDVHKNGSVKGSKRDNDRESH 771

Query: 99  DNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVSDH 158
           D+RD   NLSPEAPR KRQRFEEIPRRGDGETSEESRR+ KRP          SPNVSD 
Sbjct: 772 DSRDRRTNLSPEAPR-KRQRFEEIPRRGDGETSEESRRDGKRP----------SPNVSDR 831

Query: 159 TSSKSVEMPPYADVDGIGHHQQSGST 181
            SS +  +   ++V GIG HQQSGST
Sbjct: 832 RSSLA-GLLSSSEVGGIG-HQQSGST 844

[Close]

BLAST of CsaV3_7G019870 vs. TrEMBL
Match: tr|A0A1S3BHF3|A0A1S3BHF3_CUCME (LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo OX=3656 GN=LOC103490112 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.5e-53
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 39   EKGVRSKTSANDIH------EKESTILAPDEPEDSKSESFVSGVPKNGSTKTWKRDSDRE 98
            EKG+RSKTSAN IH       K+S ILAPDE EDSKS S VS VPK+ STKT KRDSDRE
Sbjct: 985  EKGLRSKTSANHIHLHETLLIKDSIILAPDEAEDSKSGSVVSEVPKSESTKTSKRDSDRE 1044

Query: 99   SHDNRDIHPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRNCKRPLTEIKQRPPASPNVS 158
            SHDN D+HPN+SPEAPRKKRQRFEEIPR+GDGETSEESRR+CKRPL EIKQRP ASPN S
Sbjct: 1045 SHDNWDVHPNMSPEAPRKKRQRFEEIPRKGDGETSEESRRDCKRPLNEIKQRPRASPNAS 1104

Query: 159  DHTSSKSVEMPPYADVDGIGHHQQSGSTMTEP 185
            DHTS+KSVEMP +A VDGIG HQQ GSTMTEP
Sbjct: 1105 DHTSNKSVEMPSHAVVDGIG-HQQLGSTMTEP 1135

The following BLAST results are available for this feature:

BLAST of CsaV3_7G019870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447701.2	1.4e-52	78.95	PREDICTED: LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 [Cucumis melo]	[more]
XP_022139427.1	1.9e-28	61.33	protein ENHANCED DOWNY MILDEW 2 [Momordica charantia] >XP_022139428.1 protein EN...	[more]
XP_022981352.1	4.0e-26	59.59	protein ENHANCED DOWNY MILDEW 2 isoform X1 [Cucurbita maxima] >XP_022981353.1 pr...	[more]
XP_022981356.1	4.0e-26	59.59	protein ENHANCED DOWNY MILDEW 2 isoform X2 [Cucurbita maxima]	[more]
XP_022940346.1	8.8e-26	59.59	protein ENHANCED DOWNY MILDEW 2-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_7G019870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G019870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G019870 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHF3\|A0A1S3BHF3_CUCME	9.5e-53	78.95	LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo OX=3656 GN=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G019870.1	CsaV3_7G019870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..159

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G019870	Cla003269	Watermelon (97103) v1	cucwmB594
CsaV3_7G019870	MELO3C013110	Melon (DHL92) v3.5.1	cucmeB541

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G019870	Wax gourd	cucwgoB734
CsaV3_7G019870	Silver-seed gourd	carcucB0924
CsaV3_7G019870	Silver-seed gourd	carcucB0946
CsaV3_7G019870	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G019870	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G019870	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G019870	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G019870	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G019870	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G019870	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G019870	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G019870	Wild cucumber (PI 183967)	cpicucB416
CsaV3_7G019870	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G019870	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G019870	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G019870	Watermelon (97103) v2	cucwmbB595