CsaV3_7G018600 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018600
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 8507738 .. 8508155 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGCAATCAAATTGCTATATGCAGTGAAAAGCTTTTCTTCTAATTTTACTAAATTACTCCTAGCTACCAAATGCCTCAAACACCAATGAACCCAACCTCAGACCTATAGTAATAAAGCTGACAATTTAACACAATACAAAAATTGGAAGCAATCCTGTCATCAATCTATAATGTGGGGTGTGCAAAAACGGTGAAGTTTTTTGCTCTACAACATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

mRNA sequence

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

Coding sequence (CDS)

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

Protein sequence

MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK

Homology

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BLAST of CsaV3_7G018600 vs. NCBI nr
Match: KGN59097.1 (hypothetical protein Csa_3G769630 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 69
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 55

[Close]

BLAST of CsaV3_7G018600 vs. TrEMBL
Match: tr|A0A0A0LEI0|A0A0A0LEI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 69
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 55

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59097.1	2.0e-22	100.00	hypothetical protein Csa_3G769630 [Cucumis sativus]	[more]

BLAST of CsaV3_7G018600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEI0\|A0A0A0LEI0_CUCSA	1.3e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018600.1	CsaV3_7G018600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G018600	CSPI03G34590	Wild cucumber (PI 183967)	cpicucB196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018600	Silver-seed gourd	carcucB0924
CsaV3_7G018600	Silver-seed gourd	carcucB0946
CsaV3_7G018600	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018600	Cucumber (Gy14) v1	cgycucB431
CsaV3_7G018600	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018600	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018600	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018600	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018600	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018600	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018600	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018600	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018600	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018600	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018600	Watermelon (97103) v1	cucwmB594
CsaV3_7G018600	Watermelon (97103) v2	cucwmbB595
CsaV3_7G018600	Wax gourd	cucwgoB734