CsaV3_7G016250 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G016250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGolgin, RAB6-interacting
Locationchr7 : 7992388 .. 7993841 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGTAAGTTTTATAATTAATCTTTCACGAAACGCATGTAAACAGAGTACAAGGTTTTAGCCTCTTTTGATCGCAGAATTATAATGTAAATTCTTATATTGATTTGAGTTAATTTATTTATGAAGAACAAAAGAATTAGTCTTATGTATGACAAAAGGTTCATGATTTTGAAAAGAAAAAAAAAAGACGACTTGAAATCAATAGGATCAACAAAATTTGTTCCTGGAATAATAACTGTAACGAGAGTGGAAAAAAGAACTCGAATTTCGGAATTATCACCAAAATTCGTCTCCTCCTTTTTCTCAGTTCATTATAAAATTTCAATCTTCTTCATTTTAAATTCAAACACATTAAGTGGAAATATGAAACTAACTTTTTACAAAGTGGATAAAAAAGATATATGGGAAACACCAAGAGCTATCCACAAAGAAAAAGATAGGGAAACATTAGAATCTAGATTAATGTATTTATAGTTTAGTTTGAACATCCAAGTTCGTGTTAATTTTCATGAGATTCTGTAAAACTATAATTACACTTTTCATTTGGGTACTCTTTCCAAAATTTATGGAAGACTGAAAAGGGATTTTTTTTAAAAAAAAACTAACCATGTAGACTAATTGTTAGATTAATCAATAGTCATGAACTAAATTTAAACATTTAAGTGAACATGAACTGAACACATTAAAAGATACGAGAACTAAATTAAAATTTCAACCCTAATTAAAAAAAACAACAATTATCATAGAATTGAATTTTGAGTTCTCGGATATGAAATAAAATCTCCAATGTAGAAAGAAATATGCATTTTTTTAAAAAAATACATGGAACATAACCAATGTTGTGGATGATCAAGGACTGGAGGTAATGGGAGATCCAATGGTAAGGAAGTTGGTAATGTGCAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATCTGCCAAAGAAGGTGCTGCTTCTTCCTCAATGAAAATAATTCTTTGATTTCTTATCAAGATTTCGTCTTCATTTGTCTAATTTTTTCAAAGCTAGATTTCTATTGATTTTATAACGCAAGTTTCAGGTATTAAAGGAAGATAGAAGTTGATTTTTTTTTTTTTTCTAACAGGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGGTATATAATTCTATAAAATCATTTGTAAATTTTCCTATATTTTATTGGCAACAAAAATATTTTCTTAAATTATCCATTTGTGCATATGGTCATGATCTTATCAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

mRNA sequence

ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

Coding sequence (CDS)

ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

Protein sequence

MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN
BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_004150485.1 (PREDICTED: uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical protein Csa_5G615265 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 77/114 (67.54%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVELQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_008446775.1 (PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 75/114 (65.79%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_022150510.1 (uncharacterized protein LOC111018644 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 8.2e-20
Identity = 66/112 (58.93%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEV+EKVELQL+RAEEEAKRLAQIWE                                  
Sbjct: 48  MEVREKVELQLSRAEEEAKRLAQIWEELKVMVDPMRKEVGNVRKXXXXXXXXXXSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 76
              EKEYKE  +IFNEKSNEKAQLLA LMELLGQSE+WRM+KLEEL+KNIES
Sbjct: 108 QKKEKEYKETLEIFNEKSNEKAQLLAALMELLGQSERWRMEKLEELSKNIES 159

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_007162863.1 (hypothetical protein PHAVU_001G187400g [Phaseolus vulgaris] >ESW34857.1 hypothetical protein PHAVU_001G187400g [Phaseolus vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-16
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 60
           MEV+EKV+LQL R EEE KRLA I EEKEYK+  + FNEK+ EK QL+  LMEL+ +SE+
Sbjct: 54  MEVREKVQLQLGRVEEETKRLATIREEKEYKDALESFNEKNREKVQLITKLMELVSESER 113

Query: 61  WRMKKLEELNKNIESM 77
            RMKKLEEL+KN++SM
Sbjct: 114 LRMKKLEELSKNVDSM 129

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_018853406.1 (PREDICTED: uncharacterized protein LOC109015383 [Juglans regia])

HSP 1 Score: 89.0 bits (219), Expect = 7.9e-15
Identity = 59/112 (52.68%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQL RAEEE +RLAQIWE                                  
Sbjct: 47  MEVKEKVELQLGRAEEETRRLAQIWEELEVLADPMRKEVATVRKKIDMANRDLKPLGQSC 106

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 76
              EKEYKEV + FNEK+ EK QL+ATLMELL +SE+ RMKKLEEL+K+IES
Sbjct: 107 QKKEKEYKEVLEAFNEKNKEKTQLIATLMELLTESERLRMKKLEELSKHIES 158

BLAST of CsaV3_7G016250 vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           ME++E+V+ QL R E+E+KRLA I E                                  
Sbjct: 59  MEIRERVQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTV 118

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIE 75
              E EYK+  + FNEK+ EK +L+  L EL G+SEK+R KKLEEL+KNI+
Sbjct: 119 QKKETEYKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNID 169

BLAST of CsaV3_7G016250 vs. TAIR10
Match: AT3G52900.1 (Family of unknown function (DUF662) )

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 3   VKEKVELQLTRAEEEAKRLAQIWE--EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 62
           V++K+++    A  + K LAQ  +  EKEYK+  + FNEK+ EKA L++ LMELL +SE+
Sbjct: 92  VRKKIDM----ANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMELLAESER 151

Query: 63  WRMKKLEELNKNIESM 77
            R+KKLEE+NK + ++
Sbjct: 152 LRIKKLEEINKTVGTL 163

BLAST of CsaV3_7G016250 vs. TAIR10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-09
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 27  EKEYKEVQDIFNEKSNEKAQLLATLME---LLGQSEKWRMKKLEELNKNIESM 77
           E+EYKE  D FNEK+ EK QL+  LME   L+G+SEK RM KLEEL+K+IE++
Sbjct: 143 EREYKEALDTFNEKNREKVQLITKLMEMEQLVGESEKLRMIKLEELSKSIETV 195

BLAST of CsaV3_7G016250 vs. TAIR10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 26  EEKEYKEVQDIFNEKSNEKAQLLATLME---LLGQSEKWRMKKLEELNKNIES 76
           +E+EYKE  D FNEK+ EK QL+  LME   L+G+SEK R+KKL+EL+++I++
Sbjct: 113 KEREYKEALDTFNEKNREKVQLITKLMEMGQLVGESEKLRLKKLDELSRSIDT 165

BLAST of CsaV3_7G016250 vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-07
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVK++V+ +L  AEE  +RLA+I E                                  
Sbjct: 60  MEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKPLGQSC 119

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIE 75
              E+E+KE  + +NEK+ EKA  ++ L+EL+ +SEK RM KLEEL+K+IE
Sbjct: 120 QRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIE 170

BLAST of CsaV3_7G016250 vs. TrEMBL
Match: tr|A0A0A0KTG1|A0A0A0KTG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 77/114 (67.54%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVELQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

BLAST of CsaV3_7G016250 vs. TrEMBL
Match: tr|A0A1S3BFW5|A0A1S3BFW5_CUCME (uncharacterized protein LOC103489402 OS=Cucumis melo OX=3656 GN=LOC103489402 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 75/114 (65.79%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

BLAST of CsaV3_7G016250 vs. TrEMBL
Match: tr|V7CXF1|V7CXF1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G187400g PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-16
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 60
           MEV+EKV+LQL R EEE KRLA I EEKEYK+  + FNEK+ EK QL+  LMEL+ +SE+
Sbjct: 54  MEVREKVQLQLGRVEEETKRLATIREEKEYKDALESFNEKNREKVQLITKLMELVSESER 113

Query: 61  WRMKKLEELNKNIESM 77
            RMKKLEEL+KN++SM
Sbjct: 114 LRMKKLEELSKNVDSM 129

BLAST of CsaV3_7G016250 vs. TrEMBL
Match: tr|A0A2I4HB71|A0A2I4HB71_9ROSI (uncharacterized protein LOC109015383 OS=Juglans regia OX=51240 GN=LOC109015383 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-15
Identity = 59/112 (52.68%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQL RAEEE +RLAQIWE                                  
Sbjct: 47  MEVKEKVELQLGRAEEETRRLAQIWEELEVLADPMRKEVATVRKKIDMANRDLKPLGQSC 106

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 76
              EKEYKEV + FNEK+ EK QL+ATLMELL +SE+ RMKKLEEL+K+IES
Sbjct: 107 QKKEKEYKEVLEAFNEKNKEKTQLIATLMELLTESERLRMKKLEELSKHIES 158

BLAST of CsaV3_7G016250 vs. TrEMBL
Match: tr|A0A103XH80|A0A103XH80_CYNCS (Golgin, RAB6-interacting OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007287 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-15
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 60
           MEV+EKV  QL R  EE K+LA+I +EKEY+E  + FNEK+ EK+QLLA LMEL+ +SE+
Sbjct: 56  MEVREKVHAQLDRVGEETKKLAEIRQEKEYREALEAFNEKNKEKSQLLARLMELVTESER 115

Query: 61  WRMKKLEELNKNIESM 77
            RMKKLEELN NIES+
Sbjct: 116 VRMKKLEELNNNIESL 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004150485.11.7e-2567.54PREDICTED: uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hy... [more]
XP_008446775.12.4e-2465.79PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo][more]
XP_022150510.18.2e-2058.93uncharacterized protein LOC111018644 [Momordica charantia][more]
XP_007162863.19.3e-1665.79hypothetical protein PHAVU_001G187400g [Phaseolus vulgaris] >ESW34857.1 hypothet... [more]
XP_018853406.17.9e-1552.68PREDICTED: uncharacterized protein LOC109015383 [Juglans regia][more]
Match NameE-valueIdentityDescription
AT5G03660.11.4e-1038.74Family of unknown function (DUF662) [more]
AT3G52900.12.1e-0946.05Family of unknown function (DUF662) [more]
AT2G36410.16.0e-0960.38Family of unknown function (DUF662) [more]
AT3G52920.12.3e-0854.72Family of unknown function (DUF662) [more]
AT2G27740.11.9e-0736.04Family of unknown function (DUF662) [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KTG1|A0A0A0KTG1_CUCSA1.1e-2567.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=4 SV=1[more]
tr|A0A1S3BFW5|A0A1S3BFW5_CUCME1.6e-2465.79uncharacterized protein LOC103489402 OS=Cucumis melo OX=3656 GN=LOC103489402 PE=... [more]
tr|V7CXF1|V7CXF1_PHAVU6.2e-1665.79Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G187400g PE=4 ... [more]
tr|A0A2I4HB71|A0A2I4HB71_9ROSI5.2e-1552.68uncharacterized protein LOC109015383 OS=Juglans regia OX=51240 GN=LOC109015383 P... [more]
tr|A0A103XH80|A0A103XH80_CYNCS8.9e-1564.47Golgin, RAB6-interacting OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_00... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007033GORAB
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G016250.1CsaV3_7G016250.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availablePANTHERPTHR21470:SF3SUBFAMILY NOT NAMEDcoord: 27..76
coord: 1..27
IPR007033RAB6-interacting golginPFAMPF04949Transcrip_actcoord: 1..29
e-value: 2.6E-7
score: 30.5
coord: 27..75
e-value: 3.1E-18
score: 66.0
IPR007033RAB6-interacting golginPANTHERPTHR21470NTKL-BINDING PROTEIN 1coord: 27..76
coord: 1..27

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_7G016250CsaV3_5G035610Cucumber (Chinese Long) v3cuccucB209