CsaV3_7G013850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G013850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCysteine proteinase inhibitor
Locationchr7 : 7136190 .. 7136565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAACTTTACTACATAATATATCATCTTCTAAAACTATCTATCCATCAAAAGTAGATTGTTGCAGTATGAGTTTCAAAAATAAGGGACCGCCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGACGAATTGCAGTGGACATACACAACGAACAAAAACCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGATAGGGATTAGTGATATACATGGACCTCGCATATTGTTGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAATTATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATCTTTTAAAGATCCCCTCGGGTACTACACC

mRNA sequence

ATGAGTTTCAAAAATAAGGGACCGCCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGACGAATTGCAGTGGACATACACAACGAACAAAAACCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGATAGGGATTAGTGATATACATGGACCTCGCATATTGTTGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAATTATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATCTTTTAAAGATCCCCTCGGGTACTACACC

Coding sequence (CDS)

ATGAGTTTCAAAAATAAGGGACCGCCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGACGAATTGCAGTGGACATACACAACGAACAAAAACCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGATAGGGATTAGTGATATACATGGACCTCGCATATTGTTGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAATTATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATCTTTTAAAGATCCCCTCGGGTACTACACC

Protein sequence

MSFKNKGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGPRILLYTLVVEAINKDKIIWTYVTSIKITKPSSYELVSFKDPLGYYT
Homology
[Close]
BLAST of CsaV3_7G013850 vs. NCBI nr
Match: XP_008442277.1 (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 1   MSFKNKGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGP-RI 60
           MS  +   PI +I+   +VQ +G + VD HN++  + L F RV+NGL    SD   P   
Sbjct: 1   MSIMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGG 60

Query: 61  LLYTLVVEAINKDKIIWTYVTSIK----ITKP--SSYELVSFKDPLGY 102
           +LY LV+EAI   KI WTY   +     IT P    Y   SFK  L Y
Sbjct: 61  VLYELVLEAITTSKINWTYKARVSKSKAITPPFHMLYSFQSFKPVLEY 108

[Close]
BLAST of CsaV3_7G013850 vs. NCBI nr
Match: KGN64832.1 (Cystatin Hv-CPI6 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0 

Query: 6   KGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGPRILLYTLV 65
           +  PI +++   +V+     AV IHN+QK DTL+F RV+NGL+  +         LY+L+
Sbjct: 3   RAEPIKDVND-SEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAK-----LYSLL 62

Query: 66  VEAINKDKIIWTYVTSIKI--TKPSSY-------ELVSFKDPLGYY 103
           +EA N D   W Y+  IK+    PS Y       EL+S++DPL ++
Sbjct: 63  IEATNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFW 102

[Close]
BLAST of CsaV3_7G013850 vs. TrEMBL
Match: tr|A0A1S3B5B9|A0A1S3B5B9_CUCME (Cysteine proteinase inhibitor OS=Cucumis melo OX=3656 GN=LOC103486185 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 1   MSFKNKGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGP-RI 60
           MS  +   PI +I+   +VQ +G + VD HN++  + L F RV+NGL    SD   P   
Sbjct: 1   MSIMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGG 60

Query: 61  LLYTLVVEAINKDKIIWTYVTSIK----ITKP--SSYELVSFKDPLGY 102
           +LY LV+EAI   KI WTY   +     IT P    Y   SFK  L Y
Sbjct: 61  VLYELVLEAITTSKINWTYKARVSKSKAITPPFHMLYSFQSFKPVLEY 108

[Close]
BLAST of CsaV3_7G013850 vs. TrEMBL
Match: tr|A0A0A0LVH4|A0A0A0LVH4_CUCSA (Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0 

Query: 6   KGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGPRILLYTLV 65
           +  PI +++   +V+     AV IHN+QK DTL+F RV+NGL+  +         LY+L+
Sbjct: 3   RAEPIKDVND-SEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAK-----LYSLL 62

Query: 66  VEAINKDKIIWTYVTSIKI--TKPSSY-------ELVSFKDPLGYY 103
           +EA N D   W Y+  IK+    PS Y       EL+S++DPL ++
Sbjct: 63  IEATNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFW 102

The following BLAST results are available for this feature:
BLAST of CsaV3_7G013850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442277.12.7e-0739.81PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo][more]
KGN64832.11.8e-0636.79Cystatin Hv-CPI6 [Cucumis sativus][more]
BLAST of CsaV3_7G013850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G013850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G013850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5B9|A0A1S3B5B9_CUCME1.8e-0739.81Cysteine proteinase inhibitor OS=Cucumis melo OX=3656 GN=LOC103486185 PE=3 SV=1[more]
tr|A0A0A0LVH4|A0A0A0LVH4_CUCSA1.2e-0636.79Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G013850.1CsaV3_7G013850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 8..99
e-value: 1.3E-7
score: 33.4
NoneNo IPR availableSUPERFAMILYSSF54403Cystatin/monellincoord: 11..97

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G013850Cucumber (Chinese Long) v3cuccucB219
CsaV3_7G013850Wild cucumber (PI 183967)cpicucB374
CsaV3_7G013850Melon (DHL92) v3.6.1cucmedB574