CsaV3_7G011540 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011540
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 6365493 .. 6365783 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGCACCCTTTAACTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

mRNA sequence

CTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

Coding sequence (CDS)

CTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

Protein sequence

LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESYVVVKGEKVPFIVESINELYDFPNDPNAYLG

Homology

[Close]

BLAST of CsaV3_7G011540 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LD+ IKIEKGLL F   L DFLY PIKA KW+KFF  ET+++ D+VD+FYA KFHP+ESY
Sbjct: 6  LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 61 VVVKGEKVPFIVE 74
           +V  E+VPF  E
Sbjct: 66 AIVDDERVPFTKE 78

[Close]

BLAST of CsaV3_7G011540 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LDK IKIEKGLLPFK PL DFL DPIKAFKWKKFF                         
Sbjct: 37 LDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFF------------------------- 96

Query: 61 VVVKGEKVPFIVESINELYDFPNDPNAY 89
           +V+GEKVP  V++I++LYD PN   AY
Sbjct: 97 -IVEGEKVPSTVKAISKLYDLPNGSYAY 98

[Close]

BLAST of CsaV3_7G011540 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 8   EKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHP 57
           +KGLL F   L DFL+  IKA KW+K  +SE +++LDLV+MFYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of CsaV3_7G011540 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LD+ IKIEKGLL F   L DFLY PIKA KW+KFF  ET+++ D+VD+FYA KFHP+ESY
Sbjct: 6  LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 61 VVVKGEKVPFIVE 74
           +V  E+VPF  E
Sbjct: 66 AIVDDERVPFTKE 78

[Close]

BLAST of CsaV3_7G011540 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LDK IKIEKGLLPFK PL DFL DPIKAFKWKKFF                         
Sbjct: 37 LDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFF------------------------- 96

Query: 61 VVVKGEKVPFIVESINELYDFPNDPNAY 89
           +V+GEKVP  V++I++LYD PN   AY
Sbjct: 97 -IVEGEKVPSTVKAISKLYDLPNGSYAY 98

[Close]

BLAST of CsaV3_7G011540 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 8   EKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHP 57
           +KGLL F   L DFL+  IKA KW+K  +SE +++LDLV+MFYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64973.1	1.8e-18	63.01	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
KGN53624.1	8.6e-13	52.27	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]
KGN57764.1	1.9e-07	59.18	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT82\|A0A0A0LT82_CUCSA	1.2e-18	63.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1	[more]
tr\|A0A0A0KXQ2\|A0A0A0KXQ2_CUCSA	5.7e-13	52.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1	[more]
tr\|A0A0A0L9V9\|A0A0A0L9V9_CUCSA	1.2e-07	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011540.1	CsaV3_7G011540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G011540	CSPI07G08460	Wild cucumber (PI 183967)	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011540	Silver-seed gourd	carcucB0921
CsaV3_7G011540	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011540	Cucumber (Gy14) v1	cgycucB376
CsaV3_7G011540	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011540	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011540	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011540	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011540	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011540	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011540	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011540	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011540	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011540	Watermelon (97103) v1	cucwmB585
CsaV3_7G011540	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011540	Wax gourd	cucwgoB722