CsaV3_7G011500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 6314496 .. 6314939 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGGTCAATAAAAATAGTGATGAGGGTACAAACAAGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

mRNA sequence

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

Coding sequence (CDS)

ATGGAGTGTGAGACAAAAGTGGAGGAGGAAGCGACCAAGGAGTTTGAGAAAGAAAGCAATAAAAATACTATGTTGGAGGAGAAAATGCCTAATGGCAAGAAGGAAGGAGGACAAGTATATGCAAAGATGCTCTTGCGGGCACAAGTAGAGAAAAGGCGAAAAGGAAAATTGGGATCTCGTCACCATCCATATGGCGAAGAGGAGGAAGTCTTAGGACCAAAGAGAAGACAACCATTTAAGGCTGAGGAATTCAATGACATCTTGTCATATGCTCACCGCCTTGTCCTCTACGTCATAAGAAAGGCCCTCCAAGGACAGACCCCTCAAACTTCTCGCAGCTCTACATCACCAACATCTCCAACCTACAACTCTTCCAAGAAAACCTTGCTCGCCTACTTCGAATCTAAGTAA

Protein sequence

MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPQTSRSSTSPTSPTYNSSKKTLLAYFESK

Homology

[Close]

BLAST of CsaV3_7G011500 vs. NCBI nr
Match: KGN44040.1 (hypothetical protein Csa_7G129390 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 7.8e-58
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR
Sbjct: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX 120
           HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX
Sbjct: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX 120

Query: 121 XXNSSKKTLLAYFESK 137
           XXNSSKKTLLAYFESK
Sbjct: 121 XXNSSKKTLLAYFESK 136

[Close]

BLAST of CsaV3_7G011500 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_7G011500 vs. TrEMBL
Match: tr|A0A0A0K323|A0A0A0K323_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-58
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60
           MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR
Sbjct: 1   MECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSR 60

Query: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX 120
           HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX
Sbjct: 61  HHPYGEEEEVLGPKRRQPFKAEEFNDILSYAHRLVLYVIRKALQGQTPXXXXXXXXXXXX 120

Query: 121 XXNSSKKTLLAYFESK 137
           XXNSSKKTLLAYFESK
Sbjct: 121 XXNSSKKTLLAYFESK 136

[Close]

BLAST of CsaV3_7G011500 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44040.1	7.8e-58	100.00	hypothetical protein Csa_7G129390 [Cucumis sativus]	[more]
KGN65003.1	1.3e-07	56.67	hypothetical protein Csa_1G173720 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K323\|A0A0A0K323_CUCSA	5.1e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1	[more]
tr\|A0A0A0LTC4\|A0A0A0LTC4_CUCSA	8.3e-08	56.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011500.1	CsaV3_7G011500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G011500	CSPI07G08410	Wild cucumber (PI 183967)	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011500	Silver-seed gourd	carcucB0921
CsaV3_7G011500	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011500	Cucumber (Gy14) v1	cgycucB376
CsaV3_7G011500	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011500	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011500	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011500	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011500	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011500	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011500	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011500	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011500	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011500	Watermelon (97103) v1	cucwmB585
CsaV3_7G011500	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011500	Wax gourd	cucwgoB722