CsaV3_7G011450 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011450
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 6252601 .. 6252912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGCCTGCTCACCTGTGTTGATCTGCATATGTATGCCATGCAGGAAATTGTGTACTAAGTATACAGGACTTGGTATTGAAGTTGTGTATGCAGTCATGTATAGGGTACACGATTTTGTGGTCCCAAACAAAACCCTCTTATTTTGCATTTGCCTCTCCCATCTCTCAAAAGAGTTCTCACTTCCTTTCAAGCTTGTCGCTGCTGGAGCTTCTATCGTTCACCATTTGCCGCTATGTACAATTGCTATTTCATCACCGTCCGTCGATCTCTGCTGCTGCAATCGATCCAAGATTTTTTTCACACTTTAG

mRNA sequence

ATGCGTGCCTGCTCACCTGTGTTGATCTGCATATGTATGCCATGCAGGAAATTGTGTACTAAGTATACAGGACTTGGTATTGAAGTTGTGTATGCAGTCATGTATAGGGTACACGATTTTGTGGTCCCAAACAAAACCCTCTTATTTTGCATTTGCCTCTCCCATCTCTCAAAAGAGTTCTCACTTCCTTTCAAGCTTGTCGCTGCTGGAGCTTCTATCGTTCACCATTTGCCGCTATGTACAATTGCTATTTCATCACCGTCCGTCGATCTCTGCTGCTGCAATCGATCCAAGATTTTTTTCACACTTTAG

Coding sequence (CDS)

ATGCGTGCCTGCTCACCTGTGTTGATCTGCATATGTATGCCATGCAGGAAATTGTGTACTAAGTATACAGGACTTGGTATTGAAGTTGTGTATGCAGTCATGTATAGGGTACACGATTTTGTGGTCCCAAACAAAACCCTCTTATTTTGCATTTGCCTCTCCCATCTCTCAAAAGAGTTCTCACTTCCTTTCAAGCTTGTCGCTGCTGGAGCTTCTATCGTTCACCATTTGCCGCTATGTACAATTGCTATTTCATCACCGTCCGTCGATCTCTGCTGCTGCAATCGATCCAAGATTTTTTTCACACTTTAG

Protein sequence

MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEFSLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL

Homology

[Close]

BLAST of CsaV3_7G011450 vs. NCBI nr
Match: KGN44036.1 (hypothetical protein Csa_7G122370 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF 60
           MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF
Sbjct: 1   MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF 60

Query: 61  SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL 104
           SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL
Sbjct: 61  SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL 103

[Close]

BLAST of CsaV3_7G011450 vs. TrEMBL
Match: tr|A0A0A0K8D5|A0A0A0K8D5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122370 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF 60
           MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF
Sbjct: 1   MRACSPVLICICMPCRKLCTKYTGLGIEVVYAVMYRVHDFVVPNKTLLFCICLSHLSKEF 60

Query: 61  SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL 104
           SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL
Sbjct: 61  SLPFKLVAAGASIVHHLPLCTIAISSPSVDLCCCNRSKIFFTL 103

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44036.1	2.2e-52	100.00	hypothetical protein Csa_7G122370 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8D5\|A0A0A0K8D5_CUCSA	1.4e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G122370 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011450.1	CsaV3_7G011450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011450	Silver-seed gourd	carcucB0921
CsaV3_7G011450	Silver-seed gourd	carcucB0945
CsaV3_7G011450	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011450	Cucumber (Gy14) v1	cgycucB376
CsaV3_7G011450	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011450	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011450	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011450	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011450	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011450	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011450	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G011450	Bottle gourd (USVL1VR-Ls)	cuclsiB546
CsaV3_7G011450	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011450	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011450	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011450	Watermelon (97103) v1	cucwmB585
CsaV3_7G011450	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011450	Wax gourd	cucwgoB722