CsaV3_7G011320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 6059775 .. 6060208 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTAGAGTCTATTGTGCTGAAGCCCGACCTCGCCATGCTTCTGTCTGTTGTGCTGCCTGAATCCTGCCTCACTATACAGTTTTCCATGAAGGAGAGCAAGTCTGCCAGCCTTTCTTTCTTTGATACACTATCCAAAACATAATAACTTTATAAGTTCTCCTATCAGACTGGTCGACGTTGCAGTAATAAGCTTAGCTTAGAGAAACATGATCGTTATCTGGAAAGTGAGAAAACATTTTGAAAGAATCAGCTAAAAATATCCAATAAGTGATGATTTTCCACTACAAGGAATTGAGGAACACCAGACGCCACCATATTGCGTCAGTTTTTGTACCCAAGGATGTTAGGATTACCTCTCCCGACGTCACAAGAGCCATCCATAAGACCGTCAAATGTAGTGCATTAGGGGAGCAAAGCCCGACGGACTAA

mRNA sequence

ATGTATGTAGAGTCTATTGTGCTGAAGCCCGACCTCGCCATGCTTCTGTCTGTTGTGCTGCCTGAATCCTGCCTCACTATACAGTTTTCCATGAAGGAGAGCAAACGCCACCATATTGCGTCAGTTTTTGTACCCAAGGATGTTAGGATTACCTCTCCCGACGTCACAAGAGCCATCCATAAGACCGTCAAATGTAGTGCATTAGGGGAGCAAAGCCCGACGGACTAA

Coding sequence (CDS)

ATGTATGTAGAGTCTATTGTGCTGAAGCCCGACCTCGCCATGCTTCTGTCTGTTGTGCTGCCTGAATCCTGCCTCACTATACAGTTTTCCATGAAGGAGAGCAAACGCCACCATATTGCGTCAGTTTTTGTACCCAAGGATGTTAGGATTACCTCTCCCGACGTCACAAGAGCCATCCATAAGACCGTCAAATGTAGTGCATTAGGGGAGCAAAGCCCGACGGACTAA

Protein sequence

MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIHKTVKCSALGEQSPTD
Homology
[Close]
BLAST of CsaV3_7G011320 vs. NCBI nr
Match: KGN44021.1 (hypothetical protein Csa_7G109300 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH 60
          MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH
Sbjct: 1  MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH 60

Query: 61 KTVKCSALGEQSPTD 76
          KTVKCSALGEQSPTD
Sbjct: 61 KTVKCSALGEQSPTD 75

[Close]
BLAST of CsaV3_7G011320 vs. TrEMBL
Match: tr|A0A0A0K8C5|A0A0A0K8C5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109300 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.1e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH 60
          MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH
Sbjct: 1  MYVESIVLKPDLAMLLSVVLPESCLTIQFSMKESKRHHIASVFVPKDVRITSPDVTRAIH 60

Query: 61 KTVKCSALGEQSPTD 76
          KTVKCSALGEQSPTD
Sbjct: 61 KTVKCSALGEQSPTD 75

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44021.11.1e-32100.00hypothetical protein Csa_7G109300 [Cucumis sativus][more]
BLAST of CsaV3_7G011320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8C5|A0A0A0K8C5_CUCSA7.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G011320.1CsaV3_7G011320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G011320CsGy7G007800Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G011320Wax gourdcucwgoB722
CsaV3_7G011320Silver-seed gourdcarcucB0921
CsaV3_7G011320Silver-seed gourdcarcucB0945
CsaV3_7G011320Cucurbita maxima (Rimu)cmacucB0050
CsaV3_7G011320Cucurbita maxima (Rimu)cmacucB0598
CsaV3_7G011320Cucurbita moschata (Rifu)cmocucB0036
CsaV3_7G011320Cucurbita moschata (Rifu)cmocucB0585
CsaV3_7G011320Cucurbita pepo (Zucchini)cpecucB0729
CsaV3_7G011320Cucurbita pepo (Zucchini)cpecucB0989
CsaV3_7G011320Wild cucumber (PI 183967)cpicucB415
CsaV3_7G011320Bottle gourd (USVL1VR-Ls)cuclsiB546
CsaV3_7G011320Melon (DHL92) v3.5.1cucmeB544
CsaV3_7G011320Melon (DHL92) v3.6.1cucmedB546
CsaV3_7G011320Watermelon (Charleston Gray)cucwcgB542
CsaV3_7G011320Watermelon (97103) v1cucwmB585
CsaV3_7G011320Watermelon (97103) v2cucwmbB588