CsaV3_7G011280 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011280
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 5970510 .. 5970677 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

mRNA sequence

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Coding sequence (CDS)

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Protein sequence

DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM

Homology

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_022159378.1 (uncharacterized protein LOC111025795 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-05
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDEND 49
          D++ VR HLY+NGID+SY VWFWHGE+L +     T      E+DE+D
Sbjct: 50 DIAIVRDHLYSNGIDQSYXVWFWHGEDLGNIPAEQTYNNDALESDEDD 97

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_022156813.1 (uncharacterized protein LOC111023653 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-04
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDEND-DLFNTINM 57
           D +T+R HLY +GID+SY+VWFWHGEE       + +    ++  E+D DLF+ I+M
Sbjct: 46  DAATIRNHLYEHGIDQSYRVWFWHGEEHAPRTDEDRLNDEFNKNHEDDNDLFDVIDM 102

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_022150919.1 (uncharacterized protein LOC111018955 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-04
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 2   VSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           V+ VR HL+  GID+SYK W WHGE ++      +M T+  E  E+DD  +TI M
Sbjct: 63  VNVVRDHLFVYGIDQSYKTWIWHGESISIKRNIESMSTSAQEQVEDDDFDDTIGM 117

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159378.1	2.4e-05	52.08	uncharacterized protein LOC111025795 [Momordica charantia]	[more]
XP_022156813.1	2.0e-04	45.61	uncharacterized protein LOC111023653 [Momordica charantia]	[more]
XP_022150919.1	2.6e-04	45.45	uncharacterized protein LOC111018955 [Momordica charantia]	[more]

BLAST of CsaV3_7G011280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011280 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011280.1	CsaV3_7G011280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011280	Silver-seed gourd	carcucB0921
CsaV3_7G011280	Silver-seed gourd	carcucB0945
CsaV3_7G011280	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011280	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011280	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011280	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011280	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011280	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011280	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011280	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G011280	Bottle gourd (USVL1VR-Ls)	cuclsiB546
CsaV3_7G011280	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011280	Melon (DHL92) v3.6.1	cucmedB546
CsaV3_7G011280	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011280	Watermelon (97103) v1	cucwmB585
CsaV3_7G011280	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011280	Wax gourd	cucwgoB722