CsaV3_7G011260 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011260
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 5950294 .. 5950569 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

mRNA sequence

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

Coding sequence (CDS)

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

Protein sequence

MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQA

Homology

[Close]

BLAST of CsaV3_7G011260 vs. NCBI nr
Match: KGN44017.1 (hypothetical protein Csa_7G104790 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 60
           MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL
Sbjct: 14  MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 73

Query: 61  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 93
           SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA
Sbjct: 74  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 105

[Close]

BLAST of CsaV3_7G011260 vs. TrEMBL
Match: tr|A0A0A0K6X2|A0A0A0K6X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104790 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 60
           MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL
Sbjct: 14  MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 73

Query: 61  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 93
           SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA
Sbjct: 74  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 105

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44017.1	1.7e-40	100.00	hypothetical protein Csa_7G104790 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6X2\|A0A0A0K6X2_CUCSA	1.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011260.1	CsaV3_7G011260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011260	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011260	Wild cucumber (PI 183967)	cpicucB415