CsaV3_7G009970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G009970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 5610323 .. 5610702 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGGTCAAACTTTCCAATAAGCCAATCCAACGAATGAGGTTGAAATCCAATTCGACCTTAGTTCGGAGAATTTCACAACTCAAATTCCCAATTAAAATTTACCAAACGTTCAAGCAAAATATCTCATCTTAAAATCCACAACTTAACTTGGTTGGGACAAAATAGATAAATACTGGAAGTACCATATCCAATCAAAAGTAAGCAATTCTCACCAAGTAGTGTCTCAAAACAGGGAACGACTCGACAAAGGCAGTCGACTCGGGCGCACGGCTCGCGAAAAGGAACCGGCTCGAACACTTGCACTCGCGCAGCTTGGAGACGTGCGACTTGATGGGGGGAACGACTATGTGAAGGTTGTAGCAGCTCGGGTCTAA

mRNA sequence

ATGGCTGCGGTCAAACTTTCCAATAAGCCAATCCAACGAATGAGGGAACGACTCGACAAAGGCAGTCGACTCGGGCGCACGGCTCGCGAAAAGGAACCGGCTCGAACACTTGCACTCGCGCAGCTTGGAGACGTGCGACTTGATGGGGGGAACGACTATGTGAAGGTTGTAGCAGCTCGGGTCTAA

Coding sequence (CDS)

ATGGCTGCGGTCAAACTTTCCAATAAGCCAATCCAACGAATGAGGGAACGACTCGACAAAGGCAGTCGACTCGGGCGCACGGCTCGCGAAAAGGAACCGGCTCGAACACTTGCACTCGCGCAGCTTGGAGACGTGCGACTTGATGGGGGGAACGACTATGTGAAGGTTGTAGCAGCTCGGGTCTAA

Protein sequence

MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAARV
Homology
[Close]
BLAST of CsaV3_7G009970 vs. NCBI nr
Match: KGN47128.1 (hypothetical protein Csa_6G188700 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 9.7e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR 60
          MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR
Sbjct: 1  MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]
BLAST of CsaV3_7G009970 vs. TrEMBL
Match: tr|A0A0A0KC81|A0A0A0KC81_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR 60
          MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR
Sbjct: 1  MAAVKLSNKPIQRMRERLDKGSRLGRTAREKEPARTLALAQLGDVRLDGGNDYVKVVAAR 60

Query: 61 V 62
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:
BLAST of CsaV3_7G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47128.19.7e-24100.00hypothetical protein Csa_6G188700 [Cucumis sativus][more]
BLAST of CsaV3_7G009970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G009970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G009970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KC81|A0A0A0KC81_CUCSA6.4e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G009970.1CsaV3_7G009970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..32

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G009970Silver-seed gourdcarcucB0237
CsaV3_7G009970Silver-seed gourdcarcucB0379
CsaV3_7G009970Silver-seed gourdcarcucB0954
CsaV3_7G009970Cucumber (Gy14) v2cgybcucB098
CsaV3_7G009970Cucumber (Gy14) v2cgybcucB309
CsaV3_7G009970Cucumber (Gy14) v2cgybcucB348
CsaV3_7G009970Cucumber (Gy14) v1cgycucB210
CsaV3_7G009970Cucumber (Gy14) v1cgycucB342
CsaV3_7G009970Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G009970Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G009970Cucurbita maxima (Rimu)cmacucB0690
CsaV3_7G009970Cucurbita maxima (Rimu)cmacucB0770
CsaV3_7G009970Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G009970Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G009970Cucurbita moschata (Rifu)cmocucB0675
CsaV3_7G009970Cucurbita moschata (Rifu)cmocucB0756
CsaV3_7G009970Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G009970Cucurbita pepo (Zucchini)cpecucB0370
CsaV3_7G009970Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G009970Cucurbita pepo (Zucchini)cpecucB0949
CsaV3_7G009970Wild cucumber (PI 183967)cpicucB122
CsaV3_7G009970Wild cucumber (PI 183967)cpicucB377
CsaV3_7G009970Wild cucumber (PI 183967)cpicucB415
CsaV3_7G009970Bottle gourd (USVL1VR-Ls)cuclsiB525
CsaV3_7G009970Bottle gourd (USVL1VR-Ls)cuclsiB530
CsaV3_7G009970Melon (DHL92) v3.5.1cucmeB529
CsaV3_7G009970Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G009970Melon (DHL92) v3.6.1cucmedB517
CsaV3_7G009970Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G009970Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G009970Watermelon (Charleston Gray)cucwcgB574
CsaV3_7G009970Watermelon (97103) v1cucwmB635
CsaV3_7G009970Watermelon (97103) v1cucwmB637
CsaV3_7G009970Watermelon (97103) v2cucwmbB550
CsaV3_7G009970Watermelon (97103) v2cucwmbB553
CsaV3_7G009970Wax gourdcucwgoB688
CsaV3_7G009970Wax gourdcucwgoB705
CsaV3_7G009970Cucumber (Chinese Long) v3cuccucB217