CsaV3_7G008740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G008740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 5436023 .. 5436603 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAGAGAATGCTGGGAAGGACAAAGAACGAAAGGAATTGAGCCAGATTGAGGCAGTAAGCGAATAAACTCTCTATTCTTTCTATCTTTGTTGATGCCTAAGCATAGTACATCTCATGTCAGCTTTATTGTAGATAGGTATTGGGTTAAAGACATGATAAAGTTAAAATTATAATCAAAGTTATGAGATCTCATGTCAACTTTATTGCAGATAGGGATTGGGTTATAGACATAAAGTTAAATTATAACCATACTCAAGACTTAGCTATACAATCAAAGAAATAGATATTGTCATTGTATCGGAAATATTTGAATGACATTTTCGCCAAAATCAACATTTTAAATCTCGGATTCAACAAATACTTTAGCAAATAATATAAACACAAAAATAGAAGTGGGAATCTGATTTTAATTATTGTTCATAATTGCACTTATTTTCTTTATGTTGATAATTCTTATTTTTTATATGCTAACAATTAACTAGAAGCAAGTGGCTGCTGGCCAATGGCCTTCATCGGATAATTATCTGTCGAGGACCTCACCGGTACCGCCATCAAGCAATGGAGTATCAAGTTGA

mRNA sequence

ATGAGAAAAGAGAATGCTGGGAAGGACAAAGAACGAAAGGAATTGAGCCAGATTGAGGCAAAGCAAGTGGCTGCTGGCCAATGGCCTTCATCGGATAATTATCTGTCGAGGACCTCACCGGTACCGCCATCAAGCAATGGAGTATCAAGTTGA

Coding sequence (CDS)

ATGAGAAAAGAGAATGCTGGGAAGGACAAAGAACGAAAGGAATTGAGCCAGATTGAGGCAAAGCAAGTGGCTGCTGGCCAATGGCCTTCATCGGATAATTATCTGTCGAGGACCTCACCGGTACCGCCATCAAGCAATGGAGTATCAAGTTGA

Protein sequence

MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS
Homology
[Close]
BLAST of CsaV3_7G008740 vs. NCBI nr
Match: KGN43945.1 (hypothetical protein Csa_7G074290 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS 51
          MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS
Sbjct: 1  MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS 50

[Close]
BLAST of CsaV3_7G008740 vs. NCBI nr
Match: XP_011659788.1 (PREDICTED: zinc finger protein 3-like [Cucumis sativus] >KGN45224.1 hypothetical protein Csa_7G432050 [Cucumis sativus])

HSP 1 Score: 51.6 bits (122), Expect = 9.1e-04
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 17  QIEAK-------QVAAGQWPSSDNYLSRTSPVPPSSNGVSS 51
           Q+EAK       QVAAGQWPS  NYLSRTSPVPPS++G +S
Sbjct: 156 QLEAKSRQFLYEQVAAGQWPSQKNYLSRTSPVPPSTSGATS 196

[Close]
BLAST of CsaV3_7G008740 vs. TrEMBL
Match: tr|A0A0A0K2Q0|A0A0A0K2Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074290 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS 51
          MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS
Sbjct: 1  MRKENAGKDKERKELSQIEAKQVAAGQWPSSDNYLSRTSPVPPSSNGVSS 50

[Close]
BLAST of CsaV3_7G008740 vs. TrEMBL
Match: tr|A0A0A0K8M2|A0A0A0K8M2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.0e-04
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 17  QIEAK-------QVAAGQWPSSDNYLSRTSPVPPSSNGVSS 51
           Q+EAK       QVAAGQWPS  NYLSRTSPVPPS++G +S
Sbjct: 156 QLEAKSRQFLYEQVAAGQWPSQKNYLSRTSPVPPSTSGATS 196

The following BLAST results are available for this feature:
BLAST of CsaV3_7G008740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43945.11.9e-17100.00hypothetical protein Csa_7G074290 [Cucumis sativus][more]
XP_011659788.19.1e-0465.85PREDICTED: zinc finger protein 3-like [Cucumis sativus] >KGN45224.1 hypothetical... [more]
BLAST of CsaV3_7G008740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K2Q0|A0A0A0K2Q0_CUCSA1.3e-17100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074290 PE=4 SV=1[more]
tr|A0A0A0K8M2|A0A0A0K8M2_CUCSA6.0e-0465.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G008740.1CsaV3_7G008740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..50

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G008740Cucumber (Chinese Long) v3cuccucB100
CsaV3_7G008740Cucumber (Chinese Long) v3cuccucB216
CsaV3_7G008740Silver-seed gourdcarcucB0237
CsaV3_7G008740Silver-seed gourdcarcucB0852
CsaV3_7G008740Cucumber (Gy14) v2cgybcucB098
CsaV3_7G008740Cucumber (Gy14) v2cgybcucB308
CsaV3_7G008740Cucumber (Gy14) v2cgybcucB348
CsaV3_7G008740Cucumber (Gy14) v1cgycucB127
CsaV3_7G008740Cucumber (Gy14) v1cgycucB342
CsaV3_7G008740Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G008740Cucurbita maxima (Rimu)cmacucB0589
CsaV3_7G008740Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G008740Cucurbita maxima (Rimu)cmacucB1039
CsaV3_7G008740Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G008740Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G008740Cucurbita moschata (Rifu)cmocucB1023
CsaV3_7G008740Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G008740Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G008740Wild cucumber (PI 183967)cpicucB122
CsaV3_7G008740Wild cucumber (PI 183967)cpicucB378
CsaV3_7G008740Wild cucumber (PI 183967)cpicucB415
CsaV3_7G008740Bottle gourd (USVL1VR-Ls)cuclsiB530
CsaV3_7G008740Bottle gourd (USVL1VR-Ls)cuclsiB536
CsaV3_7G008740Bottle gourd (USVL1VR-Ls)cuclsiB571
CsaV3_7G008740Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G008740Melon (DHL92) v3.5.1cucmeB587
CsaV3_7G008740Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G008740Melon (DHL92) v3.6.1cucmedB575
CsaV3_7G008740Watermelon (Charleston Gray)cucwcgB563
CsaV3_7G008740Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G008740Watermelon (97103) v1cucwmB625
CsaV3_7G008740Watermelon (97103) v1cucwmB635
CsaV3_7G008740Watermelon (97103) v2cucwmbB535
CsaV3_7G008740Watermelon (97103) v2cucwmbB550
CsaV3_7G008740Watermelon (97103) v2cucwmbB577
CsaV3_7G008740Wax gourdcucwgoB688
CsaV3_7G008740Wax gourdcucwgoB710