CsaV3_7G008430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G008430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 5249820 .. 5250281 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTCATCTTTGTGATAGTAATATTCCCAGGGAGATGAGGAATGAGAAAAGGCTCTGTTTCCGAGGAAACATTGTTGTAAGGCTCGTAAATCCGCATGAACTCCAAGGCACAGGTGGAGAAAAAACTAGTACCGTGAAAATTAAGCCTGGGAATCCCCAATTTGACAGAAGCATCGTTGGCCCAAGGAAAAAACATATCGGCTACAATACAATGGGGGCGATGTTCCGTAATAGCCTCCTCAAGTGGGGTTTGGAGCAAAGACACAGCAGAGATGAATTTGGGAATCATGGAAGGACTAATAAGGAAGTCAAGATTTTCACAGCCATCTGGGAGGCCGACTTCAGCAGAAGGGAATTTGAGTATGAGAAGGTTGATGAGTGGATTAGAATCGTGAAGGGATTTGGCAATAGAGATGGAATTGATAGGTGTTGTGACGATGGTGACCTTGATGCCACG

mRNA sequence

ATGAAGTTTCATCTTTGTGATAGTAATATTCCCAGGGAGATGAGGAATGAGAAAAGGCTCTGTTTCCGAGGAAACATTGTTGTAAGGCTCGTAAATCCGCATGAACTCCAAGGCACAGGTGGAGAAAAAACTAGTACCGTGAAAATTAAGCCTGGGAATCCCCAATTTGACAGAAGCATCGTTGGCCCAAGGAAAAAACATATCGGCTACAATACAATGGGGGCGATGTTCCGTAATAGCCTCCTCAAGTGGGGTTTGGAGCAAAGACACAGCAGAGATGAATTTGGGAATCATGGAAGGACTAATAAGGAAGTCAAGATTTTCACAGCCATCTGGGAGGCCGACTTCAGCAGAAGGGAATTTGAGTATGAGAAGGTTGATGAGTGGATTAGAATCGTGAAGGGATTTGGCAATAGAGATGGAATTGATAGGTGTTGTGACGATGGTGACCTTGATGCCACG

Coding sequence (CDS)

ATGAAGTTTCATCTTTGTGATAGTAATATTCCCAGGGAGATGAGGAATGAGAAAAGGCTCTGTTTCCGAGGAAACATTGTTGTAAGGCTCGTAAATCCGCATGAACTCCAAGGCACAGGTGGAGAAAAAACTAGTACCGTGAAAATTAAGCCTGGGAATCCCCAATTTGACAGAAGCATCGTTGGCCCAAGGAAAAAACATATCGGCTACAATACAATGGGGGCGATGTTCCGTAATAGCCTCCTCAAGTGGGGTTTGGAGCAAAGACACAGCAGAGATGAATTTGGGAATCATGGAAGGACTAATAAGGAAGTCAAGATTTTCACAGCCATCTGGGAGGCCGACTTCAGCAGAAGGGAATTTGAGTATGAGAAGGTTGATGAGTGGATTAGAATCGTGAAGGGATTTGGCAATAGAGATGGAATTGATAGGTGTTGTGACGATGGTGACCTTGATGCCACG

Protein sequence

MKFHLCDSNIPREMRNEKRLCFRGNIVVRLVNPHELQGTGGEKTSTVKIKPGNPQFDRSIVGPRKKHIGYNTMGAMFRNSLLKWGLEQRHSRDEFGNHGRTNKEVKIFTAIWEADFSRREFEYEKVDEWIRIVKGFGNRDGIDRCCDDGDLDAT
Homology
[Close]
BLAST of CsaV3_7G008430 vs. NCBI nr
Match: RDY05044.1 (hypothetical protein CR513_11164, partial [Mucuna pruriens])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 0 

Query: 2   KFHLCDSNIPREMRNEKRLCFRGNIVVRLVNPHELQGTGGEKTSTVKIKPGNPQFDRSIV 61
           + HL    I RE+RN + L  RGN+V+RLV  H  Q   GE++  V+  P NPQ    + 
Sbjct: 70  QLHLRQGYIAREIRNHEGLGVRGNLVLRLVLSHARQHAQGEESQPVEHNPRNPQLGGGVG 129

Query: 62  GPRKKHIGYNTMGAMFRNSLLKWGLEQRHSRDEFGNHGRTNKEVKIFTAIWEADFSRR-E 121
            PR +H+G+  +       +L+W  ++     E  +  R  + V I     +A F RR E
Sbjct: 130 RPRVEHVGHYAVRVFLLQQMLQWVPQKHGGFQERDDPVRGERRVGILATFGQAGFLRRWE 189

Query: 122 FEYEKVD 128
           F+   VD
Sbjct: 190 FDGSDVD 196

The following BLAST results are available for this feature:
BLAST of CsaV3_7G008430 vs. NCBI nr
Match NameE-valueIdentityDescription
RDY05044.11.2e-0933.07hypothetical protein CR513_11164, partial [Mucuna pruriens][more]
BLAST of CsaV3_7G008430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008430 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G008430.1CsaV3_7G008430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G008430Cucsa.219720Cucumber (Gy14) v1cgycucB342
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G008430Cucumber (Chinese Long) v3cuccucB100
CsaV3_7G008430Cucumber (Chinese Long) v3cuccucB156
CsaV3_7G008430Cucumber (Chinese Long) v3cuccucB188
CsaV3_7G008430Cucumber (Chinese Long) v3cuccucB216
CsaV3_7G008430Silver-seed gourdcarcucB0237
CsaV3_7G008430Silver-seed gourdcarcucB0329
CsaV3_7G008430Silver-seed gourdcarcucB0412
CsaV3_7G008430Silver-seed gourdcarcucB0841
CsaV3_7G008430Silver-seed gourdcarcucB0852
CsaV3_7G008430Cucumber (Gy14) v2cgybcucB156
CsaV3_7G008430Cucumber (Gy14) v2cgybcucB308
CsaV3_7G008430Cucumber (Gy14) v2cgybcucB348
CsaV3_7G008430Cucumber (Gy14) v1cgycucB127
CsaV3_7G008430Cucumber (Gy14) v1cgycucB370
CsaV3_7G008430Cucumber (Gy14) v1cgycucB540
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB0414
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB0589
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G008430Cucurbita maxima (Rimu)cmacucB1039
CsaV3_7G008430Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G008430Cucurbita moschata (Rifu)cmocucB0409
CsaV3_7G008430Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G008430Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G008430Cucurbita moschata (Rifu)cmocucB1023
CsaV3_7G008430Cucurbita pepo (Zucchini)cpecucB0285
CsaV3_7G008430Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G008430Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G008430Cucurbita pepo (Zucchini)cpecucB0736
CsaV3_7G008430Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G008430Wild cucumber (PI 183967)cpicucB193
CsaV3_7G008430Wild cucumber (PI 183967)cpicucB378
CsaV3_7G008430Wild cucumber (PI 183967)cpicucB415
CsaV3_7G008430Bottle gourd (USVL1VR-Ls)cuclsiB536
CsaV3_7G008430Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G008430Bottle gourd (USVL1VR-Ls)cuclsiB562
CsaV3_7G008430Bottle gourd (USVL1VR-Ls)cuclsiB571
CsaV3_7G008430Melon (DHL92) v3.5.1cucmeB579
CsaV3_7G008430Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G008430Melon (DHL92) v3.5.1cucmeB581
CsaV3_7G008430Melon (DHL92) v3.5.1cucmeB587
CsaV3_7G008430Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G008430Melon (DHL92) v3.6.1cucmedB566
CsaV3_7G008430Melon (DHL92) v3.6.1cucmedB568
CsaV3_7G008430Melon (DHL92) v3.6.1cucmedB575
CsaV3_7G008430Watermelon (Charleston Gray)cucwcgB584
CsaV3_7G008430Watermelon (Charleston Gray)cucwcgB563
CsaV3_7G008430Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G008430Watermelon (Charleston Gray)cucwcgB585
CsaV3_7G008430Watermelon (97103) v1cucwmB618
CsaV3_7G008430Watermelon (97103) v1cucwmB625
CsaV3_7G008430Watermelon (97103) v1cucwmB635
CsaV3_7G008430Watermelon (97103) v2cucwmbB535
CsaV3_7G008430Watermelon (97103) v2cucwmbB550
CsaV3_7G008430Watermelon (97103) v2cucwmbB562
CsaV3_7G008430Watermelon (97103) v2cucwmbB577
CsaV3_7G008430Wax gourdcucwgoB683
CsaV3_7G008430Wax gourdcucwgoB697
CsaV3_7G008430Wax gourdcucwgoB702