CsaV3_7G007410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G007410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 4623134 .. 4624000 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGTATGTTGAGCTAGCTATGTTCAGGTTGGTAATTCCGTTGTTACGTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTATTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTGATAATTAAACTCTCTCTTTAATTGTTCTGGTTTTGCTTGCATATATCAAAACTGAAGGTTTGAATTGAGAGTGTTAGGATGATCTAAAGAAAATTTATATCTGTACTACCGTGATAAAAGATAGAACTTGAACATGCTGCCTTTGATTTAGTTTCTTGACATCTTTCTTTCTCGGGTGCTAAACATATCGAAGTGACGAGATCGTCTATGAAGTTTGAACTACATCTTAGGTTTGGATTCTATGTTTTCTTTAGTGTGGCTTAACAGAGGGTTTCACTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTGTAAATTGCCTCATCTCTTATCTCTTTTCTTTTCTTATTTTGTGAGTGTGGTTTTATTTTGTGTAAACTTGGAAAGAACATTGATTGGTGTGCAGAATAAAAGCTGCTTTGCTGTAAAGTATATTATATAGAGTTTGTATATGCTCATTCTCGTTACCTAGCTAATTTAGTTTTTATACTTTAGCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

mRNA sequence

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHVFINTFFGS
Homology
[Close]
BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_7G069130 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMREFIAFVAHTHVFINTFFGS 86
          LLDAMREFIAFVAHTHVFINTFFGS
Sbjct: 61 LLDAMREFIAFVAHTHVFINTFFGS 85

[Close]
BLAST of CsaV3_7G007410 vs. TrEMBL
Match: tr|A0A0A0K7L8|A0A0A0K7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMREFIAFVAHTHVFINTFFGS 86
          LLDAMREFIAFVAHTHVFINTFFGS
Sbjct: 61 LLDAMREFIAFVAHTHVFINTFFGS 85

The following BLAST results are available for this feature:
BLAST of CsaV3_7G007410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43811.11.5e-19100.00hypothetical protein Csa_7G069130 [Cucumis sativus][more]
BLAST of CsaV3_7G007410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G007410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G007410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7L8|A0A0A0K7L8_CUCSA1.0e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G007410.1CsaV3_7G007410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR31568:SF22SUBFAMILY NOT NAMEDcoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G007410CSPI07G06440Wild cucumber (PI 183967)cpicucB415
CsaV3_7G007410CsGy7G006060Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G007410Silver-seed gourdcarcucB0322
CsaV3_7G007410Silver-seed gourdcarcucB0490
CsaV3_7G007410Silver-seed gourdcarcucB0769
CsaV3_7G007410Silver-seed gourdcarcucB0770
CsaV3_7G007410Cucumber (Gy14) v1cgycucB342
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0181
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0232
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0645
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G007410Cucurbita maxima (Rimu)cmacucB0959
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0158
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0629
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G007410Cucurbita moschata (Rifu)cmocucB0949
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0141
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0329
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0867
CsaV3_7G007410Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G007410Wild cucumber (PI 183967)cpicucB252
CsaV3_7G007410Bottle gourd (USVL1VR-Ls)cuclsiB552
CsaV3_7G007410Bottle gourd (USVL1VR-Ls)cuclsiB554
CsaV3_7G007410Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G007410Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G007410Melon (DHL92) v3.5.1cucmeB569
CsaV3_7G007410Melon (DHL92) v3.5.1cucmeB585
CsaV3_7G007410Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G007410Melon (DHL92) v3.6.1cucmedB572
CsaV3_7G007410Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G007410Watermelon (Charleston Gray)cucwcgB556
CsaV3_7G007410Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G007410Watermelon (Charleston Gray)cucwcgB601
CsaV3_7G007410Watermelon (97103) v1cucwmB580
CsaV3_7G007410Watermelon (97103) v1cucwmB602
CsaV3_7G007410Watermelon (97103) v1cucwmB607
CsaV3_7G007410Watermelon (97103) v2cucwmbB537
CsaV3_7G007410Watermelon (97103) v2cucwmbB550
CsaV3_7G007410Watermelon (97103) v2cucwmbB581
CsaV3_7G007410Wax gourdcucwgoB674
CsaV3_7G007410Wax gourdcucwgoB686
CsaV3_7G007410Wax gourdcucwgoB699