CsaV3_7G007360 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCACAAATCTTTGATATGTGTATGAATCGTCCCTTCGTCGGCATGTCACTAAAAATCAAGGACTCCATCACCAGCCTGCATCGAACACGAAAACGAATACGAACTCGACGAAACTCTTCAAAATATGTCGAACACATCGACCTTAATTTCAAAGTGCAACTCAGATGCACTCACGTTCTTCAAGAATATGAAGATGGCATAATGACTACAACAAGTTTCCTTCATGAACACACATCTTCATCGCATCCTTTAGCAACTTACCAGCTTCCTATCTCCATCTTCAAGAACGGCAACAGCACTTTGGAGCAATATCTTTGTGATAGGTTGCATGCACATCGAGAACTCATTGACATTACACTTGTGGCTGATAGAATAATACAGCATTGGGTTAAAAAGGTTGAAGAAGATGATTGTGATCATGATGAAGAAGAGAATAATGAAGACTTTAATGTATTTCAAAAGATTCATTCTCTTGAAATTACGTTAGAGATGAAGATTAATAGGAGGTATGTTGTAGAATCACCGGTAATGATAATGGTTCCAACAAGTGATGATGCTATAGAGAGTATGTTAAGAAGAGTGGAAAACGATGAAATAAGAAGATTAGGGTGTGATGAGGAGGGAATTGAATGTGCAATTTGTTTGGAGGAAATAAGTAGTGATAAAGAGGAGGAAGGAAGTGAGAAATCAGTGTTGCAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAGATAAATGGTTGAGGACAAGTCATTATTGCCCAACTTGTAGATTTTCAATGCCTACAAATAATTGA ATGGCAGCACAAATCTTTGATATGTGTATGAATCGTCCCTTCGTCGGCATGTCACTAAAAATCAAGGACTCCATCACCAGCCTGCATCGAACACGAAAACGAATACGAACTCGACGAAACTCTTCAAAATATGTCGAACACATCGACCTTAATTTCAAAGTGCAACTCAGATGCACTCACGTTCTTCAAGAATATGAAGATGGCATAATGACTACAACAAGTTTCCTTCATGAACACACATCTTCATCGCATCCTTTAGCAACTTACCAGCTTCCTATCTCCATCTTCAAGAACGGCAACAGCACTTTGGAGCAATATCTTTGTGATAGGTTGCATGCACATCGAGAACTCATTGACATTACACTTGTGGCTGATAGAATAATACAGCATTGGGTTAAAAAGGTTGAAGAAGATGATTGTGATCATGATGAAGAAGAGAATAATGAAGACTTTAATGTATTTCAAAAGATTCATTCTCTTGAAATTACGTTAGAGATGAAGATTAATAGGAGGTATGTTGTAGAATCACCGGTAATGATAATGGTTCCAACAAGTGATGATGCTATAGAGAGTATGTTAAGAAGAGTGGAAAACGATGAAATAAGAAGATTAGGGTGTGATGAGGAGGGAATTGAATGTGCAATTTGTTTGGAGGAAATAAGTAGTGATAAAGAGGAGGAAGGAAGTGAGAAATCAGTGTTGCAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAGATAAATGGTTGAGGACAAGTCATTATTGCCCAACTTGTAGATTTTCAATGCCTACAAATAATTGA ATGGCAGCACAAATCTTTGATATGTGTATGAATCGTCCCTTCGTCGGCATGTCACTAAAAATCAAGGACTCCATCACCAGCCTGCATCGAACACGAAAACGAATACGAACTCGACGAAACTCTTCAAAATATGTCGAACACATCGACCTTAATTTCAAAGTGCAACTCAGATGCACTCACGTTCTTCAAGAATATGAAGATGGCATAATGACTACAACAAGTTTCCTTCATGAACACACATCTTCATCGCATCCTTTAGCAACTTACCAGCTTCCTATCTCCATCTTCAAGAACGGCAACAGCACTTTGGAGCAATATCTTTGTGATAGGTTGCATGCACATCGAGAACTCATTGACATTACACTTGTGGCTGATAGAATAATACAGCATTGGGTTAAAAAGGTTGAAGAAGATGATTGTGATCATGATGAAGAAGAGAATAATGAAGACTTTAATGTATTTCAAAAGATTCATTCTCTTGAAATTACGTTAGAGATGAAGATTAATAGGAGGTATGTTGTAGAATCACCGGTAATGATAATGGTTCCAACAAGTGATGATGCTATAGAGAGTATGTTAAGAAGAGTGGAAAACGATGAAATAAGAAGATTAGGGTGTGATGAGGAGGGAATTGAATGTGCAATTTGTTTGGAGGAAATAAGTAGTGATAAAGAGGAGGAAGGAAGTGAGAAATCAGTGTTGCAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAGATAAATGGTTGAGGACAAGTCATTATTGCCCAACTTGTAGATTTTCAATGCCTACAAATAATTGA MAAQIFDMCMNRPFVGMSLKIKDSITSLHRTRKRIRTRRNSSKYVEHIDLNFKVQLRCTHVLQEYEDGIMTTTSFLHEHTSSSHPLATYQLPISIFKNGNSTLEQYLCDRLHAHRELIDITLVADRIIQHWVKKVEEDDCDHDEEENNEDFNVFQKIHSLEITLEMKINRRYVVESPVMIMVPTSDDAIESMLRRVENDEIRRLGCDEEGIECAICLEEISSDKEEEGSEKSVLQMPCLHMFHEECIDKWLRTSHYCPTCRFSMPTNN
BLAST of CsaV3_7G007360 vs. NCBI nr
Match: XP_011659722.1 (PREDICTED: uncharacterized protein LOC105436242 [Cucumis sativus] >KGN43806.1 hypothetical protein Csa_7G068590 [Cucumis sativus]) HSP 1 Score: 546.2 bits (1406), Expect = 6.2e-152 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. NCBI nr
Match: KGN43801.1 (hypothetical protein Csa_7G067560 [Cucumis sativus]) HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64 Identity = 142/280 (50.71%), Postives = 187/280 (66.79%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. NCBI nr
Match: KGN43805.1 (hypothetical protein Csa_7G068580 [Cucumis sativus]) HSP 1 Score: 250.0 bits (637), Expect = 9.2e-63 Identity = 138/270 (51.11%), Postives = 182/270 (67.41%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. NCBI nr
Match: KGN43800.1 (hypothetical protein Csa_7G067550 [Cucumis sativus]) HSP 1 Score: 245.0 bits (624), Expect = 3.0e-61 Identity = 139/276 (50.36%), Postives = 181/276 (65.58%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. NCBI nr
Match: ADN34252.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo]) HSP 1 Score: 241.1 bits (614), Expect = 4.3e-60 Identity = 136/276 (49.28%), Postives = 190/276 (68.84%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein) HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10 Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TAIR10
Match: AT2G29840.1 (RING/U-box superfamily protein) HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10 Identity = 45/140 (32.14%), Postives = 66/140 (47.14%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TAIR10
Match: AT4G18110.1 (RING/U-box superfamily protein) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10 Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TAIR10
Match: AT3G47990.1 (SUGAR-INSENSITIVE 3) HSP 1 Score: 62.4 bits (150), Expect = 5.0e-10 Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TAIR10
Match: AT5G60820.1 (RING/U-box superfamily protein) HSP 1 Score: 61.6 bits (148), Expect = 8.4e-10 Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.0e-09 Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. Swiss-Prot
Match: sp|Q8GYT9|SIS3_ARATH (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 8.9e-09 Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. Swiss-Prot
Match: sp|Q9LQX2|MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.6e-08 Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. Swiss-Prot
Match: sp|Q9C7I1|ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.4e-08 Identity = 28/66 (42.42%), Postives = 35/66 (53.03%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. Swiss-Prot
Match: sp|Q7ZW78|RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 3.4e-08 Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TrEMBL
Match: tr|A0A0A0K7L5|A0A0A0K7L5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068590 PE=4 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 4.1e-152 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TrEMBL
Match: tr|A0A0A0K7L0|A0A0A0K7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64 Identity = 142/280 (50.71%), Postives = 187/280 (66.79%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TrEMBL
Match: tr|A0A0A0K2A5|A0A0A0K2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068580 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 6.1e-63 Identity = 138/270 (51.11%), Postives = 182/270 (67.41%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TrEMBL
Match: tr|A0A0A0K2A1|A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067550 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61 Identity = 139/276 (50.36%), Postives = 181/276 (65.58%), Query Frame = 0
BLAST of CsaV3_7G007360 vs. TrEMBL
Match: tr|E5GCQ3|E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60 Identity = 136/276 (49.28%), Postives = 190/276 (68.84%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |