CsaV3_7G007160 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G007160
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cysteine proteinase inhibitor
Location	chr7 : 4487517 .. 4488740 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAAATGGTATGTCAAAATCCACAATATAATATTATAGAAGATGCCTTACAAATTGTGAAAAGCTAATCAATATTCACTTTATTCTTTATATGAAATAATAATATAAGTAACAAATTTCTTTTACAAAAGCTATATATTGAAAGTATTTTGGCTTTTTTTCAGTTTAAACAATAACTAATGATTATCTTAAAATATTAGATCATACGATCATACGATCATATGTTGTAAATTTAAAATTTAACAAGAGATAGAAATCTGTCGATATCTATCCGTGTTTTTCATTGATAAAATCTACGAAGTAAAATCAAGAAAAGAAAATTTTCACAAGGCCTATAGCGTAACAAAGAGTATCAATAACCATAGGAAGGAGGAGAGGAAAATGTTTTAAAATTGAAAAGAACATAAAACTCAATTGGATATTAAACATTCGATCAACAAAAACTATAAATTAAACACCAAAAGAAAAAAAAAAGAAAAACAAATCAAAATCAATGACTCTCTTATCTATATATTTTTTATGATCAAATAACTTTCAAAACCTTCTCAAAAGGTTCTATATATTTTTCTTGGTATTTTGGCTAAGATCAAGTGTTCTATTATTATTATTATATATATATATATGCTTCATTTTTCAATGGGTTATCTTAAGTAAGGCCTCCCAGCATATTCTTTCCAAAATTATTCTTTGACTTGCACTATTTCTCCCATGAATACACTTGTATATAAAGCTTCAACAACTCATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

mRNA sequence

ATGGCGGCAAATGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

Coding sequence (CDS)

ATGGCGGCAAATGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

Protein sequence

MAANAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD

Homology

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BLAST of CsaV3_7G007160 vs. NCBI nr
Match: XP_011658840.1 (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus] >KGN43784.1 hypothetical protein Csa_7G067390 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 5   AHIKMXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI 64
           AHIKM  XXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI
Sbjct: 20  AHIKMTIXXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI 79

Query: 65  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 124
           INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI
Sbjct: 80  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 139

Query: 125 EIVGVPPGWNLFSFTQISD 144
           EIVGVPPGWNLFSFTQISD
Sbjct: 140 EIVGVPPGWNLFSFTQISD 158

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 156.8 bits (395), Expect = 5.7e-35
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 40  KGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDG 99
           KGGCKSHDPSKKW+++ +   D  II +A FAV  FNQK+GN L F AVLEAWVVV  DG
Sbjct: 32  KGGCKSHDPSKKWTEIKSVN-DPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDG 91

Query: 100 KKEYSIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQI 142
           KKEYSIELVAKDCL+RCL +HA+VIEI G PPGWNL SF QI
Sbjct: 92  KKEYSIELVAKDCLHRCLQYHAVVIEICGTPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: XP_011658839.1 (PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus] >KGN43782.1 Phloem filament protein [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23
Identity = 63/104 (60.58%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 41  GGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGK 100
           GGCKSHDPSKKW   PN Q    ++  A FAVA FN+KYGN LVF  VLEAWV   P GK
Sbjct: 35  GGCKSHDPSKKWVICPNDQ----VVEAAKFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGK 94

Query: 101 KEYSIELVAKD-CLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 144
           KEYSIELV  D CLNR L FHA+V E         L SF QI D
Sbjct: 95  KEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTLVSFDQIVD 134

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: XP_011658838.1 (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus] >KGN43780.1 hypothetical protein Csa_7G067350 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 58/104 (55.77%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 41  GGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGK 100
           GGCKSHDPSKKWS  PN   D+V+   A FAV  +N+K+G  LVF +VLEAWV V P GK
Sbjct: 32  GGCKSHDPSKKWSVCPN---DRVVEIYARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGK 91

Query: 101 KEYSIELVAKD-CLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 144
           KEYSIELV ++ C N  L +HA+V E         L SF QI D
Sbjct: 92  KEYSIELVVREGCGNHVLKYHAVVTETGCAARRKTLVSFDQIDD 132

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 40  KGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDG 99
           KGGCKSH+PSKKW Q+ N +A  V +  A FAV AFN+KY N L F  V EAWV  + + 
Sbjct: 32  KGGCKSHNPSKKWIQLHNVKAPDV-LEAAKFAVDAFNKKYENNLEFQYVTEAWVHEV-NN 91

Query: 100 KKEYSIELVAKDCLNRCLYFHAIVIE-IVGVPPGWNLFSFTQISD 144
           +KEYSIELVAKDC +R L FHA+VIE  V     W L SF +I D
Sbjct: 92  EKEYSIELVAKDCFHRLLEFHAVVIEKTVDHKKIWILVSFERIFD 134

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BLAST of CsaV3_7G007160 vs. TrEMBL
Match: tr|A0A0A0K477|A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 9.5e-55
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 5   AHIKMXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI 64
           AHIKM  XXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI
Sbjct: 20  AHIKMTIXXXXXXXXXXXXXGXXXXXXXXXXXXXXKGGCKSHDPSKKWSQVPNAQADQVI 79

Query: 65  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 124
           INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI
Sbjct: 80  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 139

Query: 125 EIVGVPPGWNLFSFTQISD 144
           EIVGVPPGWNLFSFTQISD
Sbjct: 140 EIVGVPPGWNLFSFTQISD 158

[Close]

BLAST of CsaV3_7G007160 vs. TrEMBL
Match: tr|E5GCR5|E5GCR5_CUCME (Cysteine proteinase inhibitor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 40  KGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDG 99
           KGGCKSHDPSKKW+++ +   D  II +A FAV  FNQK+GN L F AVLEAWVVV  DG
Sbjct: 32  KGGCKSHDPSKKWTEIKSVN-DPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDG 91

Query: 100 KKEYSIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQI 142
           KKEYSIELVAKDCL+RCL +HA+VIEI G PPGWNL SF QI
Sbjct: 92  KKEYSIELVAKDCLHRCLQYHAVVIEICGTPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. TrEMBL
Match: tr|A0A0A0K660|A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 63/104 (60.58%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 41  GGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGK 100
           GGCKSHDPSKKW   PN Q    ++  A FAVA FN+KYGN LVF  VLEAWV   P GK
Sbjct: 35  GGCKSHDPSKKWVICPNDQ----VVEAAKFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGK 94

Query: 101 KEYSIELVAKD-CLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 144
           KEYSIELV  D CLNR L FHA+V E         L SF QI D
Sbjct: 95  KEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTLVSFDQIVD 134

[Close]

BLAST of CsaV3_7G007160 vs. TrEMBL
Match: tr|A0A0A0K281|A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 58/104 (55.77%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 41  GGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGK 100
           GGCKSHDPSKKWS  PN   D+V+   A FAV  +N+K+G  LVF +VLEAWV V P GK
Sbjct: 32  GGCKSHDPSKKWSVCPN---DRVVEIYARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGK 91

Query: 101 KEYSIELVAKD-CLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 144
           KEYSIELV ++ C N  L +HA+V E         L SF QI D
Sbjct: 92  KEYSIELVVREGCGNHVLKYHAVVTETGCAARRKTLVSFDQIDD 132

[Close]

BLAST of CsaV3_7G007160 vs. TrEMBL
Match: tr|E5GCR6|E5GCR6_CUCME (Cysteine proteinase inhibitor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 40  KGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDG 99
           KGGCKSH+PSKKW Q+ N +A  V +  A FAV AFN+KY N L F  V EAWV  + + 
Sbjct: 32  KGGCKSHNPSKKWIQLHNVKAPDV-LEAAKFAVDAFNKKYENNLEFQYVTEAWVHEV-NN 91

Query: 100 KKEYSIELVAKDCLNRCLYFHAIVIE-IVGVPPGWNLFSFTQISD 144
           +KEYSIELVAKDC +R L FHA+VIE  V     W L SF +I D
Sbjct: 92  EKEYSIELVAKDCFHRLLEFHAVVIEKTVDHKKIWILVSFERIFD 134

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658840.1	1.4e-54	98.56	PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus] >KGN43784.1 hy...	[more]
ADN34263.1	5.7e-35	71.57	phloem filament protein [Cucumis melo subsp. melo]	[more]
XP_011658839.1	6.5e-23	60.58	PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus] >KGN43782.1 Ph...	[more]
XP_011658838.1	1.8e-20	55.77	PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus] >KGN43780.1 hy...	[more]
ADN34264.1	4.0e-20	57.14	phloem filament protein [Cucumis melo subsp. melo]	[more]

BLAST of CsaV3_7G007160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K477\|A0A0A0K477_CUCSA	9.5e-55	98.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1	[more]
tr\|E5GCR5\|E5GCR5_CUCME	3.8e-35	71.57	Cysteine proteinase inhibitor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0K660\|A0A0A0K660_CUCSA	4.3e-23	60.58	Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067370 PE=4 SV=1	[more]
tr\|A0A0A0K281\|A0A0A0K281_CUCSA	1.2e-20	55.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067350 PE=4 SV=1	[more]
tr\|E5GCR6\|E5GCR6_CUCME	2.6e-20	57.14	Cysteine proteinase inhibitor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009994	PP1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007160.1	CsaV3_7G007160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 64..125 e-value: 6.2E-10 score: 38.9
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 50..143 e-value: 2.1E-10 score: 42.4
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 51..128

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G007160	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G007160	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G007160	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G007160	Cucurbita maxima (Rimu)	cmacucB0918
CsaV3_7G007160	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G007160	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G007160	Cucurbita moschata (Rifu)	cmocucB0910
CsaV3_7G007160	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G007160	Cucurbita pepo (Zucchini)	cpecucB0582
CsaV3_7G007160	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G007160	Wild cucumber (PI 183967)	cpicucB252
CsaV3_7G007160	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G007160	Bottle gourd (USVL1VR-Ls)	cuclsiB554
CsaV3_7G007160	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G007160	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G007160	Melon (DHL92) v3.5.1	cucmeB585
CsaV3_7G007160	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G007160	Melon (DHL92) v3.6.1	cucmedB572
CsaV3_7G007160	Watermelon (Charleston Gray)	cucwcgB535
CsaV3_7G007160	Watermelon (Charleston Gray)	cucwcgB556
CsaV3_7G007160	Watermelon (97103) v1	cucwmB580
CsaV3_7G007160	Watermelon (97103) v1	cucwmB602
CsaV3_7G007160	Watermelon (97103) v2	cucwmbB537
CsaV3_7G007160	Watermelon (97103) v2	cucwmbB581
CsaV3_7G007160	Wax gourd	cucwgoB674
CsaV3_7G007160	Wax gourd	cucwgoB686
CsaV3_7G007160	Silver-seed gourd	carcucB0323
CsaV3_7G007160	Silver-seed gourd	carcucB0413
CsaV3_7G007160	Silver-seed gourd	carcucB0770
CsaV3_7G007160	Cucumber (Gy14) v2	cgybcucB348