CsaV3_7G006610 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G006610
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At5g16860
Location	chr7 : 4108345 .. 4112650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCGTCAGTATTTGCACTTCAACATGGTAAGCAGGTACATGGATTTTCAGTACGAAATGGATTGGTGGATGATGTATTTGTAGGCAATGCTCTCGTGAGTATGTATGCCAAATGCTCAAAGATGAATGAGGCGAACAAGGTCTTTGAGGGGATAAAGAAGAAGGATGTGGTTTCTTGGAATGCTATGGTCACCGGGTATTCTCAGATTGGTAGCTTTGATAGTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATGTATGCTAAATGCAAAAGCTATAGAGTCGCTCGCAGCATTTTTGACTCGATAGAAGGAAAAGACAAGAATGTGGTGACTTGGACTGTGATGATTGGTGGATATGCTCAGCATGGGGAAGCCAATGATGCATTAAAACTGTTTGCTCAGATATTTAAACAGAAGACCTCTTTAAAGCCTAACGCCTTTACTCTATCATGTGCCTTGATGGCTTGTGCACGTTTGGGCGAGTTAAGGCTTGGAAGACAACTCCATGCCTATGCTTTGCGGAATGAAAATGAGTCTGAGGTTTTATATGTAGGCAATTGCCTCATTGACATGTATTCCAAATCGGGGGACATTGATGCTGCTCGAGCTGTGTTTGACAACATGAAATTACGAAATGTTGTTTCTTGGACTTCTTTGATGACGGGCTATGGTATGCATGGTCGTGGTGAAGAAGCTTTGCATCTTTTTGATCAAATGCAGAAACTGGGTTTTGCTGTTGATGGGATTACCTTTCTTGTCGTTTTATATGCTTGTAGTCACTCTGGAATGGTGGATCAAGGCATGATCTACTTCCACGATATGGTCAAGGGCTTTGGGATTACCCCTGGAGCCGAACATTATGCATGTATGGTCGATCTCTTGGGTCGTGCAGGTCGTCTTAACGAAGCAATGGAACTCATCAAAAACATGTCAATGGAGCCGACTGCAGTTGTATGGGTGGCATTATTAAGTGCCAGTAGAATCCATGCAAATATTGAGCTTGGGGAATATGCAGCAAGTAAATTGACAGAGTTAGGGGCAGAGAACGATGGTTCATACACATTACTTTCAAACTTGTATGCAAATGCACGACGTTGGAAAGACGTAGCAAGAATTAGGTCATTGATGAAGCATACCGGGATCAGAAAGAGGCCGGGATGTAGTTGGATACAAGGGAAGAAAAGCACTACAACTTTCTTTGTAGGTGATAGAAGTCATCCAGAATCAGAGCAAATATACAATCTTCTTTTGGATTTGATTAAACGAATAAAAGACATGGGGTACGTTCCTCAAACGAGCTTTGCTCTTCATGATGTTGATGATGAAGAGAAAGGTGATCTCCTGTTTGAGCATAGTGAAAAGTTGGCTGTTGCTTATGGGATTTTAACAACAGCCCCAGGACAGCCAATTCGGATACACAAGAATTTGCGCATCTGCGGTGATTGCCACAGTGCCTTAACCTACATTTCCATGATTATTGACCACGAGATCGTATTGAGAGACTCGAGTAGGTTCCATCATTTCAAGAAAGGCTCATGTTCTTGTAGAAGCTATTGGTGATGGAAAAATTCAGACGAAACTTTGAGGTTAGAATTTTATTTGATTTGTATTAGTTCATACCAGCACAATTCACATGTAGCATGACTTAAATGTAATCAAACATCAAAGTTTCTTCTCAAGTTCAATTCCCTACTACAAAATTGACATTACGTGATGCATGCAACTTTTAATTATTTAAATGTCAAGTAACATGTATCTTTTCCAGAAAAGGTCAAGAATAATAATAAAAAAGCGGAGTTTCACGGAATCTTTCATATATTTTCAAGCTTGCCTAAACTTGACATTTTAAAAAAGTCAAGTAATATCAAGTACACAAACTATATAATATTCTCTATTTTATTTTCCATTATCTCTCATTTTTGTTGAAAAACCCTACCTCCTTTGCGTGAAAGTAGCCACAACACACCCATCCCCCATCATCTTCTTCGATTTTCTCTTTCTCACATTAACTCTTTTTTTTGACCAACTCCTCTCAACGTTGAAAGCAGCCACAACTGCACGATTGTTGCTCTCTCATTCTCTCAACTCTCTCTAGCACTTCCTGCTTGAGTCATTGCTCCTAGGTCTGCGAGTCCACTTGGGGTTTTGAAAGATTTGATGTTCTCAGTCATCTGATGCGAATAGGTGACATGTAGGTTGGGTATTTATGTCTCCACTTAAGGTTTTCATTTTTCCTCTTTTGTTTTACTTTAATTCTAGAGAGAAAAGGGTAGTGTTGTGGGTCTCCTGATCGAGTGAAATTTGTTTTTGACATTGTATTATTTGTAGGTTTTTATAAATTCTACTCATGGGATGCGATAGGCTGTAGCTGTTTAATTTCACAGATGGGAAGCAGGGCAAAGTTTGGAAAGAAATTAATTCATCTATTGAATGTTTCTGTATTCAGTGACAGTTTAATTGTTGTAAATGTAATTCAATTGTGTTATTTTGTGATTTCTTCTCAAATTTGAATGACTAAATTAAATTTATCACCTCTTGCTTTTTTTTTTGATTTATTGATTATGGGTATTTATTTTGGTTTTAGGATCGGAGAGCGAGTAGTTCATTCACGAAGAGGGGTTCAATGATTTACATAAACATTAATTTATAAGAGCAGTTCGGTTATATAGGGATTTGATTCAAGACCTCTTTGAAAGTGAAAATAAAGAGGTTCGTAGCTTTAAAGCCAGATGTGACTTATGCTTCATTTTTTAGTACTATGTAATATGGATAAAGAAAATAACAATTTGTTTCAGAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGGTAGGAAATTCTAACTGGCAGCCAAATTGTTTTTGTAACATTGGTCATTTTTATGATCTAATGGGTGGATTTTCAGCTTTATTGTAATGTAATGAAGGTAGTTGGTGTTTCTTGAGAAATTATTCAGTTAGGCCGCCATGATGTAGTTGGTAATTTTTCACTATTGAAAAGATTTTTGAATTTATATTTTGTAGTTATTAAGTGGCATACAAAGTTTTTGAACTTTCATTGTGCAGGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG

mRNA sequence

ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGCTTTATTGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG

Coding sequence (CDS)

ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGCTTTATTGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG

Protein sequence

MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDIVSSQTGPECAALPPWNSYDPFSWISSKEFLTNSEMIANQLKSKDMSFIDSHARVAINALIVSRLLLLVELKGWQLHLSFGTNNPRSDETG

Homology

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BLAST of CsaV3_7G006610 vs. NCBI nr
Match: KGN43730.1 (hypothetical protein Csa_7G063940 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 321/421 (76.25%), Postives = 334/421 (79.33%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE
Sbjct: 14  MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 73

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR
Sbjct: 74  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 133

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD
Sbjct: 134 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 193

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI
Sbjct: 194 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 253

Query: 241 LPACAA-----------------------------LSLF----KMMQEEDI-----KLDV 300
           LPACA+                             +S++    KM +   +     K DV
Sbjct: 254 LPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV 313

Query: 301 ITWSAVIAGYAQKGHGFEA-----------------------------------XXXXXX 349
           ++W+A++ GY+Q G    A                                   XXXXXX
Sbjct: 314 VSWNAMVTGYSQIGSFDSALSLFKMMQEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 373

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BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_011658790.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658791.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658792.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658793.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658794.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658795.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658796.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658797.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658798.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_004137054.2 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658799.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658800.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 321/421 (76.25%), Postives = 334/421 (79.33%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE
Sbjct: 14  MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 73

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR
Sbjct: 74  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 133

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD
Sbjct: 134 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 193

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI
Sbjct: 194 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 253

Query: 241 LPACAA-----------------------------LSLF----KMMQEEDI-----KLDV 300
           LPACA+                             +S++    KM +   +     K DV
Sbjct: 254 LPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV 313

Query: 301 ITWSAVIAGYAQKGHGFEA-----------------------------------XXXXXX 349
           ++W+A++ GY+Q G    A                                   XXXXXX
Sbjct: 314 VSWNAMVTGYSQIGSFDSALSLFKMMQEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 373

[Close]

BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_008455181.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455182.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455183.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455184.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455185.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455186.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_008455189.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] >XP_016901762.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo])

HSP 1 Score: 519.2 bits (1336), Expect = 1.3e-143
Identity = 304/421 (72.21%), Postives = 325/421 (77.20%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIH  CGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE
Sbjct: 14  MIHPRCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 73

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           MFSYAVGAYIECGASAEAVSLLQR+IPSHSTVFWWNALIRRSV+LGLLDDTLGFYCQMQ 
Sbjct: 74  MFSYAVGAYIECGASAEAVSLLQRIIPSHSTVFWWNALIRRSVRLGLLDDTLGFYCQMQS 133

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGWLPDHYTFPFVLKACGEIPS RHGASVHA+VCA G  SNVFICNSIVAMYGRCGALDD
Sbjct: 134 LGWLPDHYTFPFVLKACGEIPSFRHGASVHAVVCAKGFESNVFICNSIVAMYGRCGALDD 193

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           A QMFDEVLER+IEDIVSWNSILAAYVQGG+SRTALRIAF+MGNHYSLKLRPDAITLVNI
Sbjct: 194 ARQMFDEVLERRIEDIVSWNSILAAYVQGGKSRTALRIAFQMGNHYSLKLRPDAITLVNI 253

Query: 241 LPACAAL-----------------------------SLF----KMMQEEDI-----KLDV 300
           LPACA++                             S++    KM +   +     K DV
Sbjct: 254 LPACASIFAIQHGKQVHGFSVRSGLVDDVFVGNALVSMYAKCSKMNEANKVFERIKKKDV 313

Query: 301 ITWSAVIAGYAQKGHGFEA-----------------------------------XXXXXX 349
           ++W+A++ GY+Q G    A                                   XXXXXX
Sbjct: 314 VSWNAMVTGYSQIGSFDSALSLFKMMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 373

[Close]

BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_022143067.1 (pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143068.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143069.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143070.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143071.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143072.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143074.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143075.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143076.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143077.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143078.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143079.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143080.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143081.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia] >XP_022143082.1 pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica charantia])

HSP 1 Score: 436.8 bits (1122), Expect = 8.7e-119
Identity = 269/421 (63.90%), Postives = 295/421 (70.07%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIHH C SY+SRIL +SV  YST  TS   IPLISLL+QC+TLINAKLAHQQI V+GFT+
Sbjct: 1   MIHHSCASYVSRILPSSVPCYSTSATS---IPLISLLQQCRTLINAKLAHQQILVNGFTQ 60

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           M +YA+GAYIECGASA+AVSLLQRLIPSHSTVFWWNALIRRSV+LG LDD LGFYCQMQR
Sbjct: 61  MVTYAIGAYIECGASAQAVSLLQRLIPSHSTVFWWNALIRRSVRLGFLDDVLGFYCQMQR 120

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGW PDHYTFPFVLKACGEIPS R GASVHA+VCANG  SNVFICNSIVAMYGRCGALDD
Sbjct: 121 LGWSPDHYTFPFVLKACGEIPSFRRGASVHAVVCANGFESNVFICNSIVAMYGRCGALDD 180

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           A Q+FDEVLERKIEDIVSWNSILAAYVQGG+S+TALRIA RM NHY+ KL PDAITLVNI
Sbjct: 181 ARQVFDEVLERKIEDIVSWNSILAAYVQGGESKTALRIAVRMANHYNCKLLPDAITLVNI 240

Query: 241 LPACAAL-------SLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEA------------ 300
           LPACA+         +        +  DV   +A++  YA+     EA            
Sbjct: 241 LPACASTLAPQHGKQVHGYAVRSGLVDDVFVGNALVDMYAKCWKMDEASRVFELMKEKXX 300

Query: 301 ------------------------------------------------------XXXXXX 349
                                                                 XXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]

BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_023514147.1 (pentatricopeptide repeat-containing protein At5g16860 [Cucurbita pepo subsp. pepo] >XP_023514148.1 pentatricopeptide repeat-containing protein At5g16860 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 1.7e-98
Identity = 226/388 (58.25%), Postives = 264/388 (68.04%), Query Frame = 0


Query: 34  ISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVF 93
           +S L+QC+TLI+AKL HQQI V+GFT++ ++A+G YIEC A  +AVSLL+RL+PSHSTVF
Sbjct: 1   MSFLKQCRTLIDAKLVHQQILVNGFTDLVTHAIGGYIECNAFGQAVSLLERLVPSHSTVF 60

Query: 94  WWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIV 153
           WWNALIRRSV+LG LDD+L FY QMQRLGWLPDHYTFPFVLKACGE  S R G SVHA+V
Sbjct: 61  WWNALIRRSVRLGFLDDSLCFYRQMQRLGWLPDHYTFPFVLKACGEKLSFRCGTSVHAMV 120

Query: 154 CANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSR 213
           CA G  SNVFICNS+VAMYGRCGALDDA Q+FDEVLERKI+DIVSWNSILAAYVQGG+S+
Sbjct: 121 CAYGFESNVFICNSVVAMYGRCGALDDARQVFDEVLERKIDDIVSWNSILAAYVQGGESK 180

Query: 214 TALRIAFRMGNHYSLKLRPDAITLVNILPACAAL-------SLFKMMQEEDIKLDVITWS 273
            ALRIAF+M  HY+ +LRPDAITLVN+LPACA+         +        +  DV   +
Sbjct: 181 AALRIAFQMAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGN 240

Query: 274 AVIAGYAQKGHGFEA--------------------------------------------- 333
           A++  YA+     EA                                             
Sbjct: 241 ALVDMYAKCSKMNEANKVFEQMKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 300

Query: 334 ---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXSVGALLYGKQTH 349
                                XXXXXXXXXXXXXXXXXXXXXXXXXXX VGALL+GKQTH
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGALLHGKQTH 360

[Close]

BLAST of CsaV3_7G006610 vs. TAIR10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 3.6e-50
Identity = 177/482 (36.72%), Postives = 243/482 (50.41%), Query Frame = 0


Query: 22  STFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGF--TEMFSYAVGAYIECGASAEAV 81
           S F+TS P I     + +CKT+   KL HQ++   G     + S+ +  YI  G  + AV
Sbjct: 21  SLFSTSAPEI-TPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAV 80

Query: 82  SLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGE 141
           SLL+R  PS + V+ WN+LIR     G  +  L  +  M  L W PD+YTFPFV KACGE
Sbjct: 81  SLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGE 140

Query: 142 IPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSW 201
           I S+R G S HA+    G  SNVF+ N++VAMY RC +L DA ++FDE+    + D+VSW
Sbjct: 141 ISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM---SVWDVVSW 200

Query: 202 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAAL---SLFK----- 261
           NSI+ +Y + G+ + AL +  RM N +    RPD ITLVN+LP CA+L   SL K     
Sbjct: 201 NSIIESYAKLGKPKVALEMFSRMTNEFG--CRPDNITLVNVLPPCASLGTHSLGKQLHCF 260

Query: 262 ------------------------MMQEEDIKL------DVITWSAVIAGYAQKGHGFEA 321
                                   MM E +         DV++W+A++AGY+Q G   +A
Sbjct: 261 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 320

Query: 322 -----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXX 381
                                              XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 321 VRLFEKMQEEKIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 380

Query: 382 XXSVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDIVSSQTGPECA-----ALP 413
           XX   AL++GK+ H Y IK  ++L  N   D+ +V+N LID+ +     + A     +L 
Sbjct: 381 XXXXXALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLS 440

[Close]

BLAST of CsaV3_7G006610 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 79/284 (27.82%), Postives = 143/284 (50.35%), Query Frame = 0


Query: 10  LSRILITSVHFYSTFTTSPPTI--------PLISLLRQCKTLINAKLAHQQIFVHGF--- 69
           L  +L  S    +T TT+ P++           S L+ CKT+   K+ H+ +   G    
Sbjct: 4   LGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDND 63

Query: 70  TEMFSYAVGAYIECGASAEAVSLLQRLI---PSHSTVFWWNALIRRSVKLGLLDDTLGFY 129
               +  V    E G + E++S  + +     S+ T F +N+LIR     GL ++ +  +
Sbjct: 64  VSTITKLVARSCELG-TRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLF 123

Query: 130 CQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRC 189
            +M   G  PD YTFPF L AC +  +  +G  +H ++   G   ++F+ NS+V  Y  C
Sbjct: 124 LRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAEC 183

Query: 190 GALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAI 249
           G LD A ++FDE+ ER   ++VSW S++  Y +   ++ A+ + FRM      ++ P+++
Sbjct: 184 GELDSARKVFDEMSER---NVVSWTSMICGYARRDFAKDAVDLFFRMVR--DEEVTPNSV 243

Query: 250 TLVNILPACAAL-------SLFKMMQEEDIKLDVITWSAVIAGY 273
           T+V ++ ACA L        ++  ++   I+++ +  SA++  Y
Sbjct: 244 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

[Close]

BLAST of CsaV3_7G006610 vs. TAIR10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-26
Identity = 84/295 (28.47%), Postives = 135/295 (45.76%), Query Frame = 0


Query: 96  NALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCA 155
           N +IR  V  G   + +  +  M      PDHYTFP VLKAC    ++  G  +H     
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168

Query: 156 NGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTA 215
            GL S +F+ N +V+MYG+CG L +A  + DE+  R   D+VSWNS++  Y Q  +   A
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR---DVVSWNSLVVGYAQNQRFDDA 228

Query: 216 LRIAFRMGNHYSLKLRPDAITLVNILPACAALSLFKMMQEEDI-----KLDVITWSAVIA 275
           L +   M    S+K+  DA T+ ++LPA +  +   +M  +D+     K  +++W+ +I 
Sbjct: 229 LEVCREM---ESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIG 288

Query: 276 GYAQKGHGFEAXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGALLYGKQTHAYVIKNILNL 335
            Y +     EA                              AL  GK+ H Y+ +  L  
Sbjct: 289 VYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 348

Query: 336 NWNDKEDDLLVLNGLIDIVSSQTGPECAALPPWNSYDPFSWISSKEFLTNSEMIA 386
           N       LL+ N LID+ +     +C  L    + D F  + S++ ++ + MI+
Sbjct: 349 N-------LLLENALIDMYA-----KCGCLE--KARDVFENMKSRDVVSWTAMIS 383

[Close]

BLAST of CsaV3_7G006610 vs. TAIR10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 8.0e-26
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 63  SYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLG 122
           S  V  Y  CG +  A  +  R+    S+ F WN+LI    +LG  +D +  Y QM   G
Sbjct: 131 SKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDG 190

Query: 123 WLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAH 182
             PD +TFP VLKACG I S++ G ++H  +   G G +V++ N++V MY +CG +  A 
Sbjct: 191 VKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKAR 250

Query: 183 QMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNIL 242
            +FD +  +   D VSWNS+L  Y+  G    AL I FR+     ++  PD + + ++L
Sbjct: 251 NVFDMIPHK---DYVSWNSMLTGYLHHGLLHEALDI-FRLMVQNGIE--PDKVAISSVL 303

[Close]

BLAST of CsaV3_7G006610 vs. TAIR10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-25
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 0


Query: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128
           Y +C A   A  L  +L      VF W A+I    ++GL +  L  + +M      PD++
Sbjct: 117 YAKCDALEIAEVLFSKL--RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNF 176

Query: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188
             P V KACG +   R G  VH  V  +GL   VF+ +S+  MYG+CG LDDA ++FDE+
Sbjct: 177 VVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI 236

Query: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA--- 248
            +R   + V+WN+++  YVQ G++  A+R+   M       + P  +T+   L A A   
Sbjct: 237 PDR---NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ---GVEPTRVTVSTCLSASANMG 296

Query: 249 ---------ALSLFKMMQEEDI--------------------------KLDVITWSAVIA 277
                    A+++   M+ ++I                          + DV+TW+ +I+
Sbjct: 297 GVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIIS 354

[Close]

BLAST of CsaV3_7G006610 vs. Swiss-Prot
Match: sp|Q9LFL5|PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.5e-49
Identity = 177/482 (36.72%), Postives = 243/482 (50.41%), Query Frame = 0


Query: 22  STFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGF--TEMFSYAVGAYIECGASAEAV 81
           S F+TS P I     + +CKT+   KL HQ++   G     + S+ +  YI  G  + AV
Sbjct: 21  SLFSTSAPEI-TPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAV 80

Query: 82  SLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGE 141
           SLL+R  PS + V+ WN+LIR     G  +  L  +  M  L W PD+YTFPFV KACGE
Sbjct: 81  SLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGE 140

Query: 142 IPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSW 201
           I S+R G S HA+    G  SNVF+ N++VAMY RC +L DA ++FDE+    + D+VSW
Sbjct: 141 ISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM---SVWDVVSW 200

Query: 202 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAAL---SLFK----- 261
           NSI+ +Y + G+ + AL +  RM N +    RPD ITLVN+LP CA+L   SL K     
Sbjct: 201 NSIIESYAKLGKPKVALEMFSRMTNEFG--CRPDNITLVNVLPPCASLGTHSLGKQLHCF 260

Query: 262 ------------------------MMQEEDIKL------DVITWSAVIAGYAQKGHGFEA 321
                                   MM E +         DV++W+A++AGY+Q G   +A
Sbjct: 261 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 320

Query: 322 -----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXX 381
                                              XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 321 VRLFEKMQEEKIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 380

Query: 382 XXSVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDIVSSQTGPECA-----ALP 413
           XX   AL++GK+ H Y IK  ++L  N   D+ +V+N LID+ +     + A     +L 
Sbjct: 381 XXXXXALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLS 440

[Close]

BLAST of CsaV3_7G006610 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-26
Identity = 79/284 (27.82%), Postives = 143/284 (50.35%), Query Frame = 0


Query: 10  LSRILITSVHFYSTFTTSPPTI--------PLISLLRQCKTLINAKLAHQQIFVHGF--- 69
           L  +L  S    +T TT+ P++           S L+ CKT+   K+ H+ +   G    
Sbjct: 4   LGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDND 63

Query: 70  TEMFSYAVGAYIECGASAEAVSLLQRLI---PSHSTVFWWNALIRRSVKLGLLDDTLGFY 129
               +  V    E G + E++S  + +     S+ T F +N+LIR     GL ++ +  +
Sbjct: 64  VSTITKLVARSCELG-TRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLF 123

Query: 130 CQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRC 189
            +M   G  PD YTFPF L AC +  +  +G  +H ++   G   ++F+ NS+V  Y  C
Sbjct: 124 LRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAEC 183

Query: 190 GALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAI 249
           G LD A ++FDE+ ER   ++VSW S++  Y +   ++ A+ + FRM      ++ P+++
Sbjct: 184 GELDSARKVFDEMSER---NVVSWTSMICGYARRDFAKDAVDLFFRMVR--DEEVTPNSV 243

Query: 250 TLVNILPACAAL-------SLFKMMQEEDIKLDVITWSAVIAGY 273
           T+V ++ ACA L        ++  ++   I+++ +  SA++  Y
Sbjct: 244 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

[Close]

BLAST of CsaV3_7G006610 vs. Swiss-Prot
Match: sp|P0C899|PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-25
Identity = 84/295 (28.47%), Postives = 135/295 (45.76%), Query Frame = 0


Query: 96  NALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCA 155
           N +IR  V  G   + +  +  M      PDHYTFP VLKAC    ++  G  +H     
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168

Query: 156 NGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTA 215
            GL S +F+ N +V+MYG+CG L +A  + DE+  R   D+VSWNS++  Y Q  +   A
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR---DVVSWNSLVVGYAQNQRFDDA 228

Query: 216 LRIAFRMGNHYSLKLRPDAITLVNILPACAALSLFKMMQEEDI-----KLDVITWSAVIA 275
           L +   M    S+K+  DA T+ ++LPA +  +   +M  +D+     K  +++W+ +I 
Sbjct: 229 LEVCREM---ESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIG 288

Query: 276 GYAQKGHGFEAXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGALLYGKQTHAYVIKNILNL 335
            Y +     EA                              AL  GK+ H Y+ +  L  
Sbjct: 289 VYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 348

Query: 336 NWNDKEDDLLVLNGLIDIVSSQTGPECAALPPWNSYDPFSWISSKEFLTNSEMIA 386
           N       LL+ N LID+ +     +C  L    + D F  + S++ ++ + MI+
Sbjct: 349 N-------LLLENALIDMYA-----KCGCLE--KARDVFENMKSRDVVSWTAMIS 383

[Close]

BLAST of CsaV3_7G006610 vs. Swiss-Prot
Match: sp|Q9SB36|PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-24
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 63  SYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLG 122
           S  V  Y  CG +  A  +  R+    S+ F WN+LI    +LG  +D +  Y QM   G
Sbjct: 131 SKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDG 190

Query: 123 WLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAH 182
             PD +TFP VLKACG I S++ G ++H  +   G G +V++ N++V MY +CG +  A 
Sbjct: 191 VKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKAR 250

Query: 183 QMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNIL 242
            +FD +  +   D VSWNS+L  Y+  G    AL I FR+     ++  PD + + ++L
Sbjct: 251 NVFDMIPHK---DYVSWNSMLTGYLHHGLLHEALDI-FRLMVQNGIE--PDKVAISSVL 303

[Close]

BLAST of CsaV3_7G006610 vs. Swiss-Prot
Match: sp|Q9FM64|PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.2e-24
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 0


Query: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128
           Y +C A   A  L  +L      VF W A+I    ++GL +  L  + +M      PD++
Sbjct: 117 YAKCDALEIAEVLFSKL--RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNF 176

Query: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188
             P V KACG +   R G  VH  V  +GL   VF+ +S+  MYG+CG LDDA ++FDE+
Sbjct: 177 VVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEI 236

Query: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA--- 248
            +R   + V+WN+++  YVQ G++  A+R+   M       + P  +T+   L A A   
Sbjct: 237 PDR---NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ---GVEPTRVTVSTCLSASANMG 296

Query: 249 ---------ALSLFKMMQEEDI--------------------------KLDVITWSAVIA 277
                    A+++   M+ ++I                          + DV+TW+ +I+
Sbjct: 297 GVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIIS 354

[Close]

BLAST of CsaV3_7G006610 vs. TrEMBL
Match: tr|A0A0A0K225|A0A0A0K225_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G063940 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.6e-153
Identity = 321/421 (76.25%), Postives = 334/421 (79.33%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE
Sbjct: 14  MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 73

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR
Sbjct: 74  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 133

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD
Sbjct: 134 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 193

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI
Sbjct: 194 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 253

Query: 241 LPACAA-----------------------------LSLF----KMMQEEDI-----KLDV 300
           LPACA+                             +S++    KM +   +     K DV
Sbjct: 254 LPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV 313

Query: 301 ITWSAVIAGYAQKGHGFEA-----------------------------------XXXXXX 349
           ++W+A++ GY+Q G    A                                   XXXXXX
Sbjct: 314 VSWNAMVTGYSQIGSFDSALSLFKMMQEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 373

[Close]

BLAST of CsaV3_7G006610 vs. TrEMBL
Match: tr|A0A1S3C0G3|A0A1S3C0G3_CUCME (pentatricopeptide repeat-containing protein At5g16860 OS=Cucumis melo OX=3656 GN=LOC103495413 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 8.8e-144
Identity = 304/421 (72.21%), Postives = 325/421 (77.20%), Query Frame = 0


Query: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 60
           MIH  CGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE
Sbjct: 14  MIHPRCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE 73

Query: 61  MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQR 120
           MFSYAVGAYIECGASAEAVSLLQR+IPSHSTVFWWNALIRRSV+LGLLDDTLGFYCQMQ 
Sbjct: 74  MFSYAVGAYIECGASAEAVSLLQRIIPSHSTVFWWNALIRRSVRLGLLDDTLGFYCQMQS 133

Query: 121 LGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDD 180
           LGWLPDHYTFPFVLKACGEIPS RHGASVHA+VCA G  SNVFICNSIVAMYGRCGALDD
Sbjct: 134 LGWLPDHYTFPFVLKACGEIPSFRHGASVHAVVCAKGFESNVFICNSIVAMYGRCGALDD 193

Query: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNI 240
           A QMFDEVLER+IEDIVSWNSILAAYVQGG+SRTALRIAF+MGNHYSLKLRPDAITLVNI
Sbjct: 194 ARQMFDEVLERRIEDIVSWNSILAAYVQGGKSRTALRIAFQMGNHYSLKLRPDAITLVNI 253

Query: 241 LPACAAL-----------------------------SLF----KMMQEEDI-----KLDV 300
           LPACA++                             S++    KM +   +     K DV
Sbjct: 254 LPACASIFAIQHGKQVHGFSVRSGLVDDVFVGNALVSMYAKCSKMNEANKVFERIKKKDV 313

Query: 301 ITWSAVIAGYAQKGHGFEA-----------------------------------XXXXXX 349
           ++W+A++ GY+Q G    A                                   XXXXXX
Sbjct: 314 VSWNAMVTGYSQIGSFDSALSLFKMMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 373

[Close]

BLAST of CsaV3_7G006610 vs. TrEMBL
Match: tr|A0A2P4KLQ7|A0A2P4KLQ7_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_27832 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.1e-84
Identity = 203/404 (50.25%), Postives = 255/404 (63.12%), Query Frame = 0


Query: 20  FYSTFTTSPPTIPLI--SLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAE 79
           F+ST TT+ PTIPLI  +LL+QCKTLI AKL HQQI V G  +M +Y +G YI C A   
Sbjct: 26  FFSTNTTTTPTIPLITNTLLKQCKTLIQAKLVHQQILVQGLADMATYLIGTYISCEAPMH 85

Query: 80  AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKAC 139
           A+ +L+ L+PS  TV+WWN LIR +V+LG L+D LG Y +MQR GW PDHYTFPFV KAC
Sbjct: 86  AIKVLECLVPSQPTVYWWNVLIRHAVRLGFLEDVLGLYRKMQRFGWKPDHYTFPFVFKAC 145

Query: 140 GEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIV 199
           G++PS R GASVHAIVCANG  SNVF+CN++VAMYGRCG LDDA Q+FDE+  R I D+V
Sbjct: 146 GDLPSFRRGASVHAIVCANGFESNVFVCNAMVAMYGRCGMLDDACQVFDELCVRGIGDVV 205

Query: 200 SWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAALSLFKMMQE-- 259
           SWNSI+AAYVQGG  + AL++  RM + +  ++ PD +++VNILPACA+LS +   +E  
Sbjct: 206 SWNSIVAAYVQGGNKKNALKMFTRMADDH--RICPDVVSIVNILPACASLSAWLQGKEIH 265

Query: 260 -----EDIKLDVITWSAVIAGYAQKGHGFEA----------------------------- 319
                  +  DV   +A++  YA+ G   EA                             
Sbjct: 266 GFAVRNGLVEDVFVGNAIVDMYAKCGMMDEANKVFERMXXXXXXXXXXXXXXXXXXXXXX 325

Query: 320 -------------------------------------XXXXXXXXXXXXXXXXXXXXXXX 349
                                                XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 326 XXXXXXXXXXEEKIELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 385

[Close]

BLAST of CsaV3_7G006610 vs. TrEMBL
Match: tr|A0A2N9EJB0|A0A2N9EJB0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2785 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.6e-81
Identity = 205/418 (49.04%), Postives = 257/418 (61.48%), Query Frame = 0


Query: 20  FYSTFT--TSPPTIPLI--SLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGAS 79
           F+ST T  TS PT PLI  +LL+QCKTLI AKL HQQI V G  +M +Y +G Y+ C A 
Sbjct: 26  FFSTNTTITSTPTNPLITNTLLKQCKTLIQAKLVHQQILVQGLADMTTYLIGTYMACEAP 85

Query: 80  AEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLK 139
             A S+L+RL+PS  TV+WWNALIRR+V+LG L+D LG Y  M RLGW PDHYTFPFV K
Sbjct: 86  LLAKSVLKRLVPSQPTVYWWNALIRRAVRLGFLEDVLGLYRNMLRLGWRPDHYTFPFVFK 145

Query: 140 ACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIED 199
           ACGE+PS R GASVHA+VCANG  SNVF+CN++VAMYGRCG LDDA Q+FDE+ ER I D
Sbjct: 146 ACGELPSFRRGASVHAVVCANGFESNVFVCNAVVAMYGRCGVLDDARQVFDELYERGIGD 205

Query: 200 IVSWNSILAAYVQGGQSRTALRIAFRM--GNHYSLKLRPDAITLVNILPACAALSLFKMM 259
           +VSWNSI+AAYVQGG ++ AL++  RM   +H   ++ PDA+++VNILPACA+LS +   
Sbjct: 206 VVSWNSIVAAYVQGGYAKNALKMFTRMVADDH---RICPDAVSIVNILPACASLSAWLQG 265

Query: 260 QE-------EDIKLDVITWSAVIAGYAQKG------------------------------ 319
           +E         +  DV   +A++  Y++ G                              
Sbjct: 266 KEVHGFAVRSGLVEDVFVGNALVDMYSKCGMMDVANKVFERMMXXXXXXXXXXXXXXXXX 325

Query: 320 ------------------------------------HGFEAXXXXXXXXXXXXXXXXXXX 359
                                                    XXXXXXXXXXXXXXXXXXX
Sbjct: 326 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 385

[Close]

BLAST of CsaV3_7G006610 vs. TrEMBL
Match: tr|A0A2I4HTG6|A0A2I4HTG6_9ROSI (pentatricopeptide repeat-containing protein At5g16860 OS=Juglans regia OX=51240 GN=LOC109021281 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 6.2e-81
Identity = 202/404 (50.00%), Postives = 253/404 (62.62%), Query Frame = 0


Query: 20  FYSTFTTSPPTIPLI--SLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAE 79
           F+ T TT  PTIPLI  +  +QCKTLI AKL HQQI V G T M +  +G YI C A  +
Sbjct: 24  FFCT-TTRTPTIPLITATFFKQCKTLIQAKLLHQQILVQGLTNMATSLMGTYIACKAPGQ 83

Query: 80  AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKAC 139
           A+ +L+RL+P++STVFWWNALIR +V LG L+D LG Y +MQRLGW PDHYTFPFVLKAC
Sbjct: 84  AILVLERLVPTYSTVFWWNALIRHAVHLGFLEDVLGLYRKMQRLGWRPDHYTFPFVLKAC 143

Query: 140 GEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIV 199
           GE+PS R GASVHA+V ANG  SNVFICN++VAMYGRCG LD A ++F+++ +R I D+V
Sbjct: 144 GELPSYRRGASVHAVVFANGFDSNVFICNAVVAMYGRCGVLDGARRVFEDLCQRGIGDVV 203

Query: 200 SWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAALSLF------- 259
           SWNSI+AAYVQ G +  AL+I  RM      ++ PDA+++VN LPACA+L  +       
Sbjct: 204 SWNSIVAAYVQSGDANNALKIFGRM--TADTRICPDAVSIVNTLPACASLGAWSQGKEVH 263

Query: 260 -------------------------KMMQEED------IKLDVITWSAVIAGYAQKGHGF 319
                                    +MM E +      +  DV++W+A++ GY+Q G   
Sbjct: 264 GFAVRCGLVEDVFVGNAIVDMYAKCQMMDEANKVFERMVVKDVVSWNAMVTGYSQIGRFE 323

Query: 320 EA-----------------------------------XXXXXXXXXXXXXXXXXXXXXXX 349
           +A                                   XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 324 DALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 383

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43730.1	2.4e-153	76.25	hypothetical protein Csa_7G063940 [Cucumis sativus]	[more]
XP_011658790.1	2.4e-153	76.25	PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativu...	[more]
XP_008455181.1	1.3e-143	72.21	PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo] ...	[more]
XP_022143067.1	8.7e-119	63.90	pentatricopeptide repeat-containing protein At5g16860 isoform X1 [Momordica char...	[more]
XP_023514147.1	1.7e-98	58.25	pentatricopeptide repeat-containing protein At5g16860 [Cucurbita pepo subsp. pep...	[more]

BLAST of CsaV3_7G006610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16860.1	3.6e-50	36.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	1.1e-27	27.82	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe...	[more]
AT3G49142.1	2.1e-26	28.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G25270.1	8.0e-26	35.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55740.1	2.3e-25	29.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_7G006610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFL5\|PP390_ARATH	6.5e-49	36.72	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LUJ2\|PP249_ARATH	2.0e-26	27.82	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C899\|PP271_ARATH	3.8e-25	28.47	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
sp\|Q9SB36\|PP337_ARATH	1.4e-24	35.75	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
sp\|Q9FM64\|PP431_ARATH	4.2e-24	29.67	Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_7G006610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K225\|A0A0A0K225_CUCSA	1.6e-153	76.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G063940 PE=4 SV=1	[more]
tr\|A0A1S3C0G3\|A0A1S3C0G3_CUCME	8.8e-144	72.21	pentatricopeptide repeat-containing protein At5g16860 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2P4KLQ7\|A0A2P4KLQ7_QUESU	2.1e-84	50.25	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_2...	[more]
tr\|A0A2N9EJB0\|A0A2N9EJB0_FAGSY	1.6e-81	49.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2785 PE=4 SV=1	[more]
tr\|A0A2I4HTG6\|A0A2I4HTG6_9ROSI	6.2e-81	50.00	pentatricopeptide repeat-containing protein At5g16860 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006610.1	CsaV3_7G006610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 95..122 e-value: 0.072 score: 13.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 156..207 e-value: 0.0032 score: 17.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 263..297 e-value: 1.2E-7 score: 29.5 coord: 95..126 e-value: 5.5E-4 score: 17.9 coord: 164..194 e-value: 0.0032 score: 15.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 261..308 e-value: 1.6E-11 score: 44.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 91..125 score: 9.043
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..295 score: 11.838
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 161..195 score: 9.898
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 27..147 e-value: 2.3E-9 score: 38.8 coord: 246..323 e-value: 1.3E-18 score: 69.0 coord: 148..245 e-value: 1.0E-15 score: 59.5
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 102..247
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 258..349
None	No IPR available	PANTHER	PTHR24015:SF128	SUBFAMILY NOT NAMED	coord: 258..349
None	No IPR available	PANTHER	PTHR24015:SF128	SUBFAMILY NOT NAMED	coord: 102..247

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G006610	CSPI07G05620	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G006610	Cucsa.218030	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G006610	MELO3C018633.2	Melon (DHL92) v3.6.1	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G006610	Silver-seed gourd	carcucB0402
CsaV3_7G006610	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G006610	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G006610	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G006610	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G006610	Cucurbita moschata (Rifu)	cmocucB0627
CsaV3_7G006610	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G006610	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G006610	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G006610	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G006610	Watermelon (Charleston Gray)	cucwcgB535
CsaV3_7G006610	Watermelon (97103) v1	cucwmB580
CsaV3_7G006610	Watermelon (97103) v2	cucwmbB581
CsaV3_7G006610	Wax gourd	cucwgoB686