CsaV3_7G006530 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G006530
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 4051185 .. 4051487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGGTGCTCCTCTGACCTCCCTTTTGGTCTTGTTTACATGACTGAAATGACGTGTCAACAGAATTCGCATTGGTGTGAGCTATTTATAAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

mRNA sequence

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

Coding sequence (CDS)

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

Protein sequence

MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWLSRLQTANVELD

Homology

[Close]

BLAST of CsaV3_7G006530 vs. NCBI nr
Match: KGN43721.1 (hypothetical protein Csa_7G062870 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60
          MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL
Sbjct: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60

Query: 61 SRLQTANVELD 72
          SRLQTANVELD
Sbjct: 61 SRLQTANVELD 71

[Close]

BLAST of CsaV3_7G006530 vs. TrEMBL
Match: tr|A0A0A0K7C7|A0A0A0K7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062870 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60
          MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL
Sbjct: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60

Query: 61 SRLQTANVELD 72
          SRLQTANVELD
Sbjct: 61 SRLQTANVELD 71

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43721.1	4.5e-33	100.00	hypothetical protein Csa_7G062870 [Cucumis sativus]	[more]

BLAST of CsaV3_7G006530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G006530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G006530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7C7\|A0A0A0K7C7_CUCSA	3.0e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062870 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006530.1	CsaV3_7G006530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G006530	Silver-seed gourd	carcucB0402
CsaV3_7G006530	Silver-seed gourd	carcucB1013
CsaV3_7G006530	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G006530	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G006530	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G006530	Cucurbita maxima (Rimu)	cmacucB0642
CsaV3_7G006530	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G006530	Cucurbita moschata (Rifu)	cmocucB0627
CsaV3_7G006530	Cucurbita pepo (Zucchini)	cpecucB0326
CsaV3_7G006530	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G006530	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G006530	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G006530	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G006530	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G006530	Watermelon (Charleston Gray)	cucwcgB535
CsaV3_7G006530	Watermelon (97103) v1	cucwmB580
CsaV3_7G006530	Watermelon (97103) v2	cucwmbB581
CsaV3_7G006530	Wax gourd	cucwgoB686