CsaV3_7G006100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 3683874 .. 3685628 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGCTTTACAAGTTCTGGTGGACTAAATTACTCCTCTTGGAGCTGTGGCTACTTATTACCTCTTCAATAGAAAACGAAATAGATTTCATGATGATGATGGACACACACAACATTCTGGTGAGTCTGATACTTTTATGCACTCATGGCTTCGGAGTGATGATATGGTGATTTCTTGAAATCTAAATTTGAATTTTTTGGCAATTTTTTTCTCTCTTTTTTATGAATAACTAAAAGATGAAAGGGCAATTACAAAAGTACTTTGTCATCGAAGCCCATAGAGAAACACATAACCTCACAAAAGACCTTACATTGCTCGAAGATCTTGTTAGCTCTTCAAAAATTATTTTGTTCCTTTCTCTCAAAAGTCCCCACAAGGTCGCTCACATTCCCAAGACTTTCTTTTTTCGTGAAAGATTGGATGGAGAAGGAATTCCTCAAACATCTTTTGCAACCCCTATGCCTAGCCAAACCAAGACCAAAGGATGCAACAGCACGACCCCCCATTATGGGTGCCTTCCTCATCACCCTGCTCAACTTGTTAACTCTTCCGTGGAGCTCCAACCAAATGAAGAGCTTAACTTTAAATTACATACCCGGTTCTTATGGTTCGGATGAAGTTCTAATTTACTCCTTAACTAGAAAAACTACTAACCTTGACACATCATGACGATGTAGAAGAGATTAGGAAGCATTCAAAATAAAACTACAAGTTTATCAAGACTAAATTGATAGAAGAAAATAGGTTGTGCCTGCTGAAATCCTCTCCATCTCCTCCATTCTTTTCTTGTTTTTCAAATCCTAAGATCTGACGTGAATATATAGGAAATTGGGGTGGCGTTGAGGCATCTTTTCGCAGGGATGCACATGCACGCACAAAAAGGTGATGGCACCATGACACTACCACAAAATCATGCCTTATATCTCTAGCATTGCACGACAATGGGGCGCTGCACTGTGGGGCATTTTTGTCATTTGGCTCCTTTTGTTGCTATTTGTTCTATTTTTAGCCCAACTTGTTCTAGGACGTCCCGAGAGTCTCCTTTGCTCTATTTCCTTTCTAAGAACACATTTAAGCATTAAATTCATAAGAAAAAGCTTGATTTAGGCAGCTCCTTTTTTTTAAAAAAAAAAACAGCTCTCTTAGAGAGCTATCATCCACAAATGATTTCTTATCGAAGATAAATGGTATGGAGGAAGAAATACAGAGTAGAGGGGTCTTTATAATTCTAACTTATTCGACTAGCTCTCATTTAGGTAGTTTTTAAAAAGTTAAAGATTGTTGGGGAAGGGATGGACAACTAGATTGCTTTTCTTGGCACACTGCATATTTCGTGTAATGTGATCTTTATCTCATTACTATCAGGCTGAATACATTATATTTTTCCCGATGGAACTAGTGTGCATACCCCATCTCTTGTGTATCCAACCCTTCTCATTATCCTAGTATTTTCTCATGTTGTAAAAAACATCAGCATAATGTTATAGTCGTCAACCATTGTGATTAGTCAAATTAGTGCGTGAACTAATACTAATTTCCTTGATACAGACGGAGAAAGTCATGCACATATTGTGGTGCATCTGTGCACGTGGTTGATAAGTATTATAAAGTTGCATGGATATCCTTCTGGTCAAACAGTGAAACAATTCCTGAGGCATCCTTTCTCTCACTTTGAGAGTAGTCGAGATTTTCGTTTCACAGTAGTTAAAAATGTTTTGGAAATTCTAGCTTCTGCTGCCATGGCTGATTGA

mRNA sequence

ATGATTAGGCTTTACAAGTTCTGGTGGACTAAATTACTCCTCTTGGAGCTGTGGCTACTTATTACCTCTTCAATAGAAAACGAAATAGATTTCATGATGATGATGGACACACACAACATTCTGGAAATTGGGGTGGCGTTGAGGCATCTTTTCGCAGGGATGCACATGCACGCACAAAAAGACGGAGAAAGTCATGCACATATTGTGGTGCATCTGTGCACGTGGTTGATAAGTATTATAAAGTTGCATGGATATCCTTCTGGTCAAACAGTGAAACAATTCCTGAGGCATCCTTTCTCTCACTTTGAGAGTAGTCGAGATTTTCGTTTCACAGTAGTTAAAAATGTTTTGGAAATTCTAGCTTCTGCTGCCATGGCTGATTGA

Coding sequence (CDS)

ATGATTAGGCTTTACAAGTTCTGGTGGACTAAATTACTCCTCTTGGAGCTGTGGCTACTTATTACCTCTTCAATAGAAAACGAAATAGATTTCATGATGATGATGGACACACACAACATTCTGGAAATTGGGGTGGCGTTGAGGCATCTTTTCGCAGGGATGCACATGCACGCACAAAAAGACGGAGAAAGTCATGCACATATTGTGGTGCATCTGTGCACGTGGTTGATAAGTATTATAAAGTTGCATGGATATCCTTCTGGTCAAACAGTGAAACAATTCCTGAGGCATCCTTTCTCTCACTTTGAGAGTAGTCGAGATTTTCGTTTCACAGTAGTTAAAAATGTTTTGGAAATTCTAGCTTCTGCTGCCATGGCTGATTGA

Protein sequence

MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQKDGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEILASAAMAD
Homology
[Close]
BLAST of CsaV3_7G006100 vs. NCBI nr
Match: KGN43669.1 (hypothetical protein Csa_7G056480 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 9.5e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK 60
           MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK
Sbjct: 1   MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK 60

Query: 61  DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL 120
           DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL
Sbjct: 61  DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL 120

Query: 121 ASAAMAD 128
           ASAAMAD
Sbjct: 121 ASAAMAD 127

[Close]
BLAST of CsaV3_7G006100 vs. TrEMBL
Match: tr|A0A0A0K3W4|A0A0A0K3W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056480 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.3e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK 60
           MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK
Sbjct: 1   MIRLYKFWWTKLLLLELWLLITSSIENEIDFMMMMDTHNILEIGVALRHLFAGMHMHAQK 60

Query: 61  DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL 120
           DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL
Sbjct: 61  DGESHAHIVVHLCTWLISIIKLHGYPSGQTVKQFLRHPFSHFESSRDFRFTVVKNVLEIL 120

Query: 121 ASAAMAD 128
           ASAAMAD
Sbjct: 121 ASAAMAD 127

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43669.19.5e-66100.00hypothetical protein Csa_7G056480 [Cucumis sativus][more]
BLAST of CsaV3_7G006100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3W4|A0A0A0K3W4_CUCSA6.3e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056480 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006100.1CsaV3_7G006100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006100CsGy7G004710Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006100Silver-seed gourdcarcucB0677
CsaV3_7G006100Silver-seed gourdcarcucB0772
CsaV3_7G006100Cucumber (Gy14) v1cgycucB529
CsaV3_7G006100Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006100Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G006100Cucurbita maxima (Rimu)cmacucB0642
CsaV3_7G006100Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006100Cucurbita moschata (Rifu)cmocucB0627
CsaV3_7G006100Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G006100Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G006100Cucurbita pepo (Zucchini)cpecucB0326
CsaV3_7G006100Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006100Wild cucumber (PI 183967)cpicucB415
CsaV3_7G006100Bottle gourd (USVL1VR-Ls)cuclsiB534
CsaV3_7G006100Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006100Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006100Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G006100Watermelon (Charleston Gray)cucwcgB551
CsaV3_7G006100Watermelon (97103) v1cucwmB586
CsaV3_7G006100Watermelon (97103) v2cucwmbB597
CsaV3_7G006100Wax gourdcucwgoB686