CsaV3_7G004350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G004350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 3135020 .. 3135226 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

mRNA sequence

ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

Coding sequence (CDS)

ATGAATGTGAGTCCTTTCTCTTTAATTGAGAAAAGCTCTTTCACTGATGATCATTACTCGACCGGCCCAATTCTAGCTTATTCTCATACTAGGGAAAACCTCCGAGGAAAGATTAAAGAGAAAGAGAGAGAACAAAAGGAGGTAAAGCCTACAACTACTTTGCACCCTGGCTTCTTGCTAAAGTTGTGCTCAGACAACAACGGATAA

Protein sequence

MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLLKLCSDNNG
Homology
[Close]
BLAST of CsaV3_7G004350 vs. NCBI nr
Match: KGN43606.1 (hypothetical protein Csa_7G047410 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60
          MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL
Sbjct: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60

Query: 61 KLCSDNNG 69
          KLCSDNNG
Sbjct: 61 KLCSDNNG 68

[Close]
BLAST of CsaV3_7G004350 vs. TrEMBL
Match: tr|A0A0A0K714|A0A0A0K714_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047410 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60
          MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL
Sbjct: 1  MNVSPFSLIEKSSFTDDHYSTGPILAYSHTRENLRGKIKEKEREQKEVKPTTTLHPGFLL 60

Query: 61 KLCSDNNG 69
          KLCSDNNG
Sbjct: 61 KLCSDNNG 68

The following BLAST results are available for this feature:
BLAST of CsaV3_7G004350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43606.11.8e-31100.00hypothetical protein Csa_7G047410 [Cucumis sativus][more]
BLAST of CsaV3_7G004350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G004350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G004350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K714|A0A0A0K714_CUCSA1.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047410 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G004350.1CsaV3_7G004350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G004350Wax gourdcucwgoB687
CsaV3_7G004350Wax gourdcucwgoB707
CsaV3_7G004350Cucumber (Chinese Long) v3cuccucB213
CsaV3_7G004350Cucumber (Chinese Long) v3cuccucB218
CsaV3_7G004350Silver-seed gourdcarcucB0034
CsaV3_7G004350Silver-seed gourdcarcucB0176
CsaV3_7G004350Silver-seed gourdcarcucB0758
CsaV3_7G004350Silver-seed gourdcarcucB0915
CsaV3_7G004350Silver-seed gourdcarcucB0993
CsaV3_7G004350Cucumber (Gy14) v2cgybcucB310
CsaV3_7G004350Cucumber (Gy14) v2cgybcucB348
CsaV3_7G004350Cucumber (Gy14) v1cgycucB029
CsaV3_7G004350Cucumber (Gy14) v1cgycucB162
CsaV3_7G004350Cucumber (Gy14) v1cgycucB177
CsaV3_7G004350Cucumber (Gy14) v1cgycucB226
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0269
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0511
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0686
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB0768
CsaV3_7G004350Cucurbita maxima (Rimu)cmacucB1040
CsaV3_7G004350Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G004350Cucurbita moschata (Rifu)cmocucB0259
CsaV3_7G004350Cucurbita moschata (Rifu)cmocucB0498
CsaV3_7G004350Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G004350Cucurbita moschata (Rifu)cmocucB0754
CsaV3_7G004350Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G004350Cucurbita pepo (Zucchini)cpecucB0656
CsaV3_7G004350Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G004350Cucurbita pepo (Zucchini)cpecucB0946
CsaV3_7G004350Wild cucumber (PI 183967)cpicucB373
CsaV3_7G004350Wild cucumber (PI 183967)cpicucB379
CsaV3_7G004350Wild cucumber (PI 183967)cpicucB415
CsaV3_7G004350Bottle gourd (USVL1VR-Ls)cuclsiB522
CsaV3_7G004350Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G004350Melon (DHL92) v3.5.1cucmeB531
CsaV3_7G004350Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G004350Melon (DHL92) v3.6.1cucmedB519
CsaV3_7G004350Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G004350Watermelon (Charleston Gray)cucwcgB561
CsaV3_7G004350Watermelon (Charleston Gray)cucwcgB564
CsaV3_7G004350Watermelon (97103) v1cucwmB623
CsaV3_7G004350Watermelon (97103) v1cucwmB627
CsaV3_7G004350Watermelon (97103) v2cucwmbB534
CsaV3_7G004350Watermelon (97103) v2cucwmbB542