CsaV3_7G004270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G004270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At1g03560, mitochondrial
Locationchr7 : 3091540 .. 3094049 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAGCCCTACTCAGACCTTCCTTCCGTTGCTCTTCATCTCGTCCTCTTCATTTACTTGATCCTAAATCATATTCTTTGTATGGAAATGGCAAATTGTCTTCGAAGGGTTCAGATTACGGTTTCAGCCAGAATTTCAGGTTTGTATTTACAAACACTCTTCTCCCACCTCCCGAATGGATAGAACCTTTCGTGGATGTCTCTGATGTAATTTCCAGCTCTCAACCGCTAGACCCATCTCCATGGGTGGCCCAAATTTTGAATCTTCTAGATGGGTCTTCGAACATGGAACACAATCTAGATTCTTTTTGTCGGAAGTTTTTTGTTAAGTTATCGCCAAATTTTGTTACATTCGTTTTACAATCTGTTGAGCTTCGTGAGAAACCTGAAGTTGCTGTTCGGTTCTTTTTTTGGGCGGGTAAGCAGAAGAAATATGTTCATAAGATTGAATGCCATGTGTCTTTGATTGAACTCTTAACTTTTTCGGCCGATTTGGTCAAAATCCGATTGGTGTTCTTTGAACTTAAAGATAGGGGTTTGTTAATGACTGAATCGGCGGCTAATTCTTTGATTAAGAGCTTTGGGAATCTTGGACTTGTTGAGGAATTGTTGTGGGTATGGCGACGAATGAAGGAAAATGGGATTGACCCAAGTTTGTATACTTATAACTTTTTGGTAAATGGGTTAGTGAATTCAATGTTTATTGAATCTGCTGAGAAGGTTTTTGAGGTCATGGATGGTGGGAAGATTGTACCCGACACCGTGACCTATAATATTATGATAAAAGGATATTGCAAGGCTGGGAAATTGCAGAAGGCAATGGAGAAATTTAGAGATATGGAGATGAAGAATGTGAAACCGGATAAGATTACGTACATGACATTGATCCAGGCATGTTATTCAGAACGTGATTTCGATACTTGTCTGAGTCTCTACCTTGAAATGGAAGAAAGGGGATTGGAAATTCCTCCTCATTCTTATAGTTTAGTTATTGGTGGGCTTTGTAAGCAAAGAAAATGTATGGAAGCTTATGCTGTTTTTGAGACAATGAATCAGAAAGGTTGTAGAGCAAATGTTGCAATTTATACAGCTTTGATTGATTCTTACTCAAAAAATGGAAGCATGGAAGAGGCCATGAGGCTCTTTGAGAGGATGAAAAATGAAGGGTTCGAACCTGATGCAGTTACGTATAGTGTCCTAGTTAATGGATTGTGCAAAAGTGGTAGATTGGATGATGGAATGGAACTTTTTGATTTCTGCAGAAATAAAGGAGTGGCCATCAATGCAATGTTTTATGCTAGTTTAATTGATGGACTAGGAAAGGCTGGGAGAATCGAAGATGCAGAAAATCTTTTTGAAGAAATGTCTGAAAAGGGTTGTGCTCGAGATTCGTATTGTTATAACGCCATTATAGATGCACTAGCTAAGCATGGGAAGATCGATCAAGCTTTAGCACTTTTTGGGAGGATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCGATAAAGTTCTGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTCGAGCTCTTGCGATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCGGAAACGGCATTTGAGGATATGATCAACACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCAGATGGAATTGTGGATCGGGGCAGGGAAATACCGGGGAGAATACGTACAGTGCTTATCAATGCCTTGAGAAAGGCAGGTAATTCTGATTTGGTCATCAAACTGATGCATAGTAAGATAGGCATAGGATATGATCGGATGGGTAGTATTAAAAGACGAGTTAAATTCAGAACACTTCTTGAAAATTGAGTTCTTCTCGTCTCTGGTGCCTTTATTCTCATTTTCATCCTCAATGAATTTCATATCCTATCTTTAACTTTTGCAATGACCATCACAAGTTTTATTTTGTTCGTAGTTAATAACTATGCTCTGGAGAAACTCTGTTTTGACCGTCTTTTGTTCCACTGGGTTTATTTCTTGTGATAATTGAACAAAACTAAGAACCTACAGTGGAAATCATTCCAGATGCAGTCACTGTGTCAACCCTTCCGCACATTGCGACCAAATACATAGCCATGGCTCTTTTTCTTGTCTTTGATATGGATGCCTCTTTTTCAGACAAAAGTTTCTCATAGCTAAAGACAATTTCTTTCAAATGATTTCTATTTTTGACACAAATCTTAGGTATCATGCCTGTTGTTCTGGTCTTTGATTGTGTAAGGAGATCAATGTTCGTATTTCTAAGGGACAGACCGATTCTGTCGCTTTTATTTTTAATTAAGTAGCCAATGGGACATCTTTTCCATGTTTCCGTTGAATCGTACTGTGCTAGAAAGAAACAACATGAGAAAAGGTAG

mRNA sequence

ATGAGAAGAGCCCTACTCAGACCTTCCTTCCGTTGCTCTTCATCTCGTCCTCTTCATTTACTTGATCCTAAATCATATTCTTTGTATGGAAATGGCAAATTGTCTTCGAAGGGTTCAGATTACGGTTTCAGCCAGAATTTCAGGTTTGTATTTACAAACACTCTTCTCCCACCTCCCGAATGGATAGAACCTTTCGTGGATGTCTCTGATGTAATTTCCAGCTCTCAACCGCTAGACCCATCTCCATGGGTGGCCCAAATTTTGAATCTTCTAGATGGGTCTTCGAACATGGAACACAATCTAGATTCTTTTTGTCGGAAGTTTTTTGTTAAGTTATCGCCAAATTTTGTTACATTCGTTTTACAATCTGTTGAGCTTCGTGAGAAACCTGAAGTTGCTGTTCGGTTCTTTTTTTGGGCGGGTAAGCAGAAGAAATATGTTCATAAGATTGAATGCCATGTGTCTTTGATTGAACTCTTAACTTTTTCGGCCGATTTGGTCAAAATCCGATTGGTGTTCTTTGAACTTAAAGATAGGGGTTTGTTAATGACTGAATCGGCGGCTAATTCTTTGATTAAGAGCTTTGGGAATCTTGGACTTGTTGAGGAATTGTTGTGGGTATGGCGACGAATGAAGGAAAATGGGATTGACCCAAGTTTGTATACTTATAACTTTTTGGTAAATGGGTTAGTGAATTCAATGTTTATTGAATCTGCTGAGAAGGTTTTTGAGGTCATGGATGGTGGGAAGATTGTACCCGACACCGTGACCTATAATATTATGATAAAAGGATATTGCAAGGCTGGGAAATTGCAGAAGGCAATGGAGAAATTTAGAGATATGGAGATGAAGAATGTGAAACCGGATAAGATTACGTACATGACATTGATCCAGGCATGTTATTCAGAACGTGATTTCGATACTTGTCTGAGTCTCTACCTTGAAATGGAAGAAAGGGGATTGGAAATTCCTCCTCATTCTTATAGTTTAGTTATTGGTGGGCTTTGTAAGCAAAGAAAATGTATGGAAGCTTATGCTGTTTTTGAGACAATGAATCAGAAAGGTTGTAGAGCAAATGTTGCAATTTATACAGCTTTGATTGATTCTTACTCAAAAAATGGAAGCATGGAAGAGGCCATGAGGCTCTTTGAGAGGATGAAAAATGAAGGGTTCGAACCTGATGCAGTTACGTATAGTGTCCTAGTTAATGGATTGTGCAAAAGTGGTAGATTGGATGATGGAATGGAACTTTTTGATTTCTGCAGAAATAAAGGAGTGGCCATCAATGCAATGTTTTATGCTAGTTTAATTGATGGACTAGGAAAGGCTGGGAGAATCGAAGATGCAGAAAATCTTTTTGAAGAAATGTCTGAAAAGGGTTGTGCTCGAGATTCGTATTGTTATAACGCCATTATAGATGCACTAGCTAAGCATGGGAAGATCGATCAAGCTTTAGCACTTTTTGGGAGGATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCGATAAAGTTCTGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTCGAGCTCTTGCGATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCGGAAACGGCATTTGAGGATATGATCAACACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCAGATGGAATTGTGGATCGGGGCAGGGAAATACCGGGGAGAATACGTACAGTGCTTATCAATGCCTTGAGAAAGGCAGTTAATAACTATGCTCTGGAGAAACTCTGTTTTGACCGTCTTTTGTTCCACTGGCCAATGGGACATCTTTTCCATGTTTCCGTTGAATCGTACTGTGCTAGAAAGAAACAACATGAGAAAAGGTAG

Coding sequence (CDS)

ATGAGAAGAGCCCTACTCAGACCTTCCTTCCGTTGCTCTTCATCTCGTCCTCTTCATTTACTTGATCCTAAATCATATTCTTTGTATGGAAATGGCAAATTGTCTTCGAAGGGTTCAGATTACGGTTTCAGCCAGAATTTCAGGTTTGTATTTACAAACACTCTTCTCCCACCTCCCGAATGGATAGAACCTTTCGTGGATGTCTCTGATGTAATTTCCAGCTCTCAACCGCTAGACCCATCTCCATGGGTGGCCCAAATTTTGAATCTTCTAGATGGGTCTTCGAACATGGAACACAATCTAGATTCTTTTTGTCGGAAGTTTTTTGTTAAGTTATCGCCAAATTTTGTTACATTCGTTTTACAATCTGTTGAGCTTCGTGAGAAACCTGAAGTTGCTGTTCGGTTCTTTTTTTGGGCGGGTAAGCAGAAGAAATATGTTCATAAGATTGAATGCCATGTGTCTTTGATTGAACTCTTAACTTTTTCGGCCGATTTGGTCAAAATCCGATTGGTGTTCTTTGAACTTAAAGATAGGGGTTTGTTAATGACTGAATCGGCGGCTAATTCTTTGATTAAGAGCTTTGGGAATCTTGGACTTGTTGAGGAATTGTTGTGGGTATGGCGACGAATGAAGGAAAATGGGATTGACCCAAGTTTGTATACTTATAACTTTTTGGTAAATGGGTTAGTGAATTCAATGTTTATTGAATCTGCTGAGAAGGTTTTTGAGGTCATGGATGGTGGGAAGATTGTACCCGACACCGTGACCTATAATATTATGATAAAAGGATATTGCAAGGCTGGGAAATTGCAGAAGGCAATGGAGAAATTTAGAGATATGGAGATGAAGAATGTGAAACCGGATAAGATTACGTACATGACATTGATCCAGGCATGTTATTCAGAACGTGATTTCGATACTTGTCTGAGTCTCTACCTTGAAATGGAAGAAAGGGGATTGGAAATTCCTCCTCATTCTTATAGTTTAGTTATTGGTGGGCTTTGTAAGCAAAGAAAATGTATGGAAGCTTATGCTGTTTTTGAGACAATGAATCAGAAAGGTTGTAGAGCAAATGTTGCAATTTATACAGCTTTGATTGATTCTTACTCAAAAAATGGAAGCATGGAAGAGGCCATGAGGCTCTTTGAGAGGATGAAAAATGAAGGGTTCGAACCTGATGCAGTTACGTATAGTGTCCTAGTTAATGGATTGTGCAAAAGTGGTAGATTGGATGATGGAATGGAACTTTTTGATTTCTGCAGAAATAAAGGAGTGGCCATCAATGCAATGTTTTATGCTAGTTTAATTGATGGACTAGGAAAGGCTGGGAGAATCGAAGATGCAGAAAATCTTTTTGAAGAAATGTCTGAAAAGGGTTGTGCTCGAGATTCGTATTGTTATAACGCCATTATAGATGCACTAGCTAAGCATGGGAAGATCGATCAAGCTTTAGCACTTTTTGGGAGGATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCGATAAAGTTCTGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTCGAGCTCTTGCGATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCGGAAACGGCATTTGAGGATATGATCAACACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCAGATGGAATTGTGGATCGGGGCAGGGAAATACCGGGGAGAATACGTACAGTGCTTATCAATGCCTTGAGAAAGGCAGTTAATAACTATGCTCTGGAGAAACTCTGTTTTGACCGTCTTTTGTTCCACTGGCCAATGGGACATCTTTTCCATGTTTCCGTTGAATCGTACTGTGCTAGAAAGAAACAACATGAGAAAAGGTAG

Protein sequence

MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAVNNYALEKLCFDRLLFHWPMGHLFHVSVESYCARKKQHEKR
Homology
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BLAST of CsaV3_7G004270 vs. NCBI nr
Match: XP_004137016.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucumis sativus] >KGN43597.1 hypothetical protein Csa_7G047320 [Cucumis sativus])

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60
           MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE
Sbjct: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60

Query: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120
           WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV
Sbjct: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120

Query: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180
           LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG
Sbjct: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180

Query: 181 LLMTESAANSLIKSFGNLGLVEELLW 207
           LLMTESAANSLIKSFGNLGLVEELLW
Sbjct: 181 LLMTESAANSLIKSFGNLGLVEELLW 206

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BLAST of CsaV3_7G004270 vs. NCBI nr
Match: XP_008455340.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 1.2e-100
Identity = 188/206 (91.26%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60
           MRR+LLRPSF CSSSR L L D KSYSLY NGKLSS  SDYGFSQNFRFVFTNTLLPPPE
Sbjct: 1   MRRSLLRPSFLCSSSRSLRLPDHKSYSLYENGKLSSTSSDYGFSQNFRFVFTNTLLPPPE 60

Query: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120
           WIEPFVDVSDVISSS PLDPSPWV QILNLLDGSSNMEHNLDSFCRKFF+KLSPNFVTFV
Sbjct: 61  WIEPFVDVSDVISSSSPLDPSPWVTQILNLLDGSSNMEHNLDSFCRKFFIKLSPNFVTFV 120

Query: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180
           LQSVELREKPE+AVRFFFWAGKQKKYVHKIEC+VSLIELLTFSADLVKIR VFFELKD+ 
Sbjct: 121 LQSVELREKPEIAVRFFFWAGKQKKYVHKIECYVSLIELLTFSADLVKIRSVFFELKDKD 180

Query: 181 LLMTESAANSLIKSFGNLGLVEELLW 207
           LLMTE AANSLIKSFGNLGLVEELLW
Sbjct: 181 LLMTELAANSLIKSFGNLGLVEELLW 206

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BLAST of CsaV3_7G004270 vs. NCBI nr
Match: XP_022953016.1 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 9.4e-93
Identity = 178/210 (84.76%), Postives = 186/210 (88.57%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSD----YGFSQNFRFVFTNTLL 60
           MRR LLRPSF CSSSRPL LLDPKSYSLY NGK+S   SD     GF +NFRFVFTNTLL
Sbjct: 1   MRRTLLRPSFLCSSSRPLRLLDPKSYSLYRNGKVSPNSSDCNVTRGFGENFRFVFTNTLL 60

Query: 61  PPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNF 120
           PPPEWIEPFVDVSDV+SSSQ  DPSPWVAQILNLLDGSSNME NLDSFCRKF +KLSPNF
Sbjct: 61  PPPEWIEPFVDVSDVVSSSQRPDPSPWVAQILNLLDGSSNMEANLDSFCRKFLIKLSPNF 120

Query: 121 VTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL 180
           V FVLQSVELRE PE+A RFF+WAGKQKKYVHKIEC+VSLIELLTFSADLVKIRL+F EL
Sbjct: 121 VAFVLQSVELREVPEIAFRFFYWAGKQKKYVHKIECYVSLIELLTFSADLVKIRLIFCEL 180

Query: 181 KDRGLLMTESAANSLIKSFGNLGLVEELLW 207
           K RGLLMT SAANSLIKSFGN GLVEELLW
Sbjct: 181 KGRGLLMTLSAANSLIKSFGNHGLVEELLW 210

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BLAST of CsaV3_7G004270 vs. NCBI nr
Match: XP_022969029.1 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-91
Identity = 176/210 (83.81%), Postives = 185/210 (88.10%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSD----YGFSQNFRFVFTNTLL 60
           MRR LLRPSF CSSSRPL LLDP SYSLY NGKLS   SD     GF + FRFVFTNTLL
Sbjct: 1   MRRTLLRPSFLCSSSRPLRLLDPNSYSLYRNGKLSPNSSDCNVTRGFGEYFRFVFTNTLL 60

Query: 61  PPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNF 120
           PPPEWIEPFVDVSDV+SSSQ  DPSPWVAQILNLLDGSSNME NLDSFCRKF +KLSPNF
Sbjct: 61  PPPEWIEPFVDVSDVVSSSQRPDPSPWVAQILNLLDGSSNMEANLDSFCRKFLIKLSPNF 120

Query: 121 VTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL 180
           V FVLQSVELRE PE+A+RFF+WAGKQKKYVHKIEC+VSLIELLTFSADLVKIRL+F EL
Sbjct: 121 VAFVLQSVELREVPEIAIRFFYWAGKQKKYVHKIECYVSLIELLTFSADLVKIRLIFCEL 180

Query: 181 KDRGLLMTESAANSLIKSFGNLGLVEELLW 207
           K +GLLMT SAANSLIKSFGN GLVEELLW
Sbjct: 181 KGKGLLMTLSAANSLIKSFGNHGLVEELLW 210

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BLAST of CsaV3_7G004270 vs. NCBI nr
Match: XP_022148014.1 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Momordica charantia])

HSP 1 Score: 317.8 bits (813), Expect = 8.8e-83
Identity = 161/204 (78.92%), Postives = 177/204 (86.76%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYG----FSQNFRFVFTNTLL 60
           MRR LLRP F  SSSRPLHL+DPKS SLY NGKL  + S+      F  N R VFTNTLL
Sbjct: 1   MRRTLLRPPFFYSSSRPLHLVDPKSCSLYRNGKLFPENSESNVTCVFGANSRCVFTNTLL 60

Query: 61  PPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNF 120
           PPPEWIEPFVDVSDV+SSSQ +DPSPWVAQILNLLDGS NME NLDSFCR F +KLSPNF
Sbjct: 61  PPPEWIEPFVDVSDVVSSSQGVDPSPWVAQILNLLDGSPNMEANLDSFCRNFLIKLSPNF 120

Query: 121 VTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL 180
           V+FVLQSVELREKPE+A+RFF+W GKQKKYVHK+EC+VSLIELLTFSADLV+IRL+F EL
Sbjct: 121 VSFVLQSVELREKPEIALRFFYWTGKQKKYVHKLECYVSLIELLTFSADLVRIRLLFREL 180

Query: 181 KDRGLLMTESAANSLIKSFGNLGL 201
           KD+GLLM+ SAANSLIKSFGNLGL
Sbjct: 181 KDKGLLMSLSAANSLIKSFGNLGL 204

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BLAST of CsaV3_7G004270 vs. TAIR10
Match: AT1G03560.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-56
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 0 

Query: 24  KSYSLYGNGKL---SSKGSDYGFSQ-NFRFVFTNTLLPPPEWIEPFVDVSDVISSSQPLD 83
           +S+ LY NG      SK S    S+ + R+VF ++ LPPPEWIEPF DVSD++ S++ L 
Sbjct: 22  QSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPPPEWIEPFNDVSDLVKSNRNLL 81

Query: 84  PSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFW 143
           PSPWV+QILNLLDGS++ME NLD FCRKF +KLSPNFV+FVL+S E+REKP++A  FF W
Sbjct: 82  PSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCW 141

Query: 144 AGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLG 203
           + KQKKY H +EC+VSL+++L  + D+ +IR V  E+K     MT SAAN+LIKSFG LG
Sbjct: 142 SRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLG 201

Query: 204 LVEELLW 207
           +VEELLW
Sbjct: 202 MVEELLW 208

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BLAST of CsaV3_7G004270 vs. TAIR10
Match: AT5G06400.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-07
Identity = 32/117 (27.35%), Postives = 59/117 (50.43%), Query Frame = 0 

Query: 84  VAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQ 143
           V +I  +L  S + E   ++   K  V+ +P  V  VL+  ++  +    +RFF W GK+
Sbjct: 615 VQEICRVLSSSRDWERTQEAL-EKSTVQFTPELVVEVLRHAKI--QGNAVLRFFSWVGKR 674

Query: 144 KKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGL 201
             Y H  E +   I++     D  ++R +F+E++ +G L+T+     +I  +G  GL
Sbjct: 675 NGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGL 728

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BLAST of CsaV3_7G004270 vs. TAIR10
Match: AT1G73710.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.0e-05
Identity = 35/124 (28.23%), Postives = 61/124 (49.19%), Query Frame = 0 

Query: 84  VAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQ 143
           +  IL  LD S+++E  L S C    + LSP   T +L+    + + E  +R F +    
Sbjct: 86  IPSILRSLDSSTDIETTLASLC----LNLSPKEQTVLLKE---QTRWERVLRVFRFFQSH 145

Query: 144 KKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEE 203
           + YV  +  +  ++  L  +    ++RL + E+   G+L T +    L+  +G  GLV+E
Sbjct: 146 QSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKE 202

Query: 204 -LLW 207
            LLW
Sbjct: 206 ALLW 202

[Close]
BLAST of CsaV3_7G004270 vs. TAIR10
Match: AT1G30290.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.0e-05
Identity = 31/114 (27.19%), Postives = 57/114 (50.00%), Query Frame = 0 

Query: 82  PWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAG 141
           P V ++  L+   S+     +   R     L P+ V  VL+S   ++   VA++FF+WA 
Sbjct: 142 PLVREVGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVLRS---QDDERVALKFFYWAD 201

Query: 142 KQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSF 196
           +Q +Y H    + S++E+L+ +      R V   +K RG+  T  A + ++ S+
Sbjct: 202 RQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSY 252

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BLAST of CsaV3_7G004270 vs. Swiss-Prot
Match: sp|Q9LR67|PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.1e-55
Identity = 110/187 (58.82%), Postives = 142/187 (75.94%), Query Frame = 0 

Query: 24  KSYSLYGNGKL---SSKGSDYGFSQ-NFRFVFTNTLLPPPEWIEPFVDVSDVISSSQPLD 83
           +S+ LY NG      SK S    S+ + R+VF ++ LPPPEWIEPF DVSD++ S++ L 
Sbjct: 22  QSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPPPEWIEPFNDVSDLVKSNRNLL 81

Query: 84  PSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFW 143
           PSPWV+QILNLLDGS++ME NLD FCRKF +KLSPNFV+FVL+S E+REKP++A  FF W
Sbjct: 82  PSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCW 141

Query: 144 AGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLG 203
           + KQKKY H +EC+VSL+++L  + D+ +IR V  E+K     MT SAAN+LIKSFG LG
Sbjct: 142 SRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLG 201

Query: 204 LVEELLW 207
           +VEELLW
Sbjct: 202 MVEELLW 208

[Close]
BLAST of CsaV3_7G004270 vs. Swiss-Prot
Match: sp|Q9FNG8|PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g06400 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-06
Identity = 32/117 (27.35%), Postives = 59/117 (50.43%), Query Frame = 0 

Query: 84  VAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQ 143
           V +I  +L  S + E   ++   K  V+ +P  V  VL+  ++  +    +RFF W GK+
Sbjct: 615 VQEICRVLSSSRDWERTQEAL-EKSTVQFTPELVVEVLRHAKI--QGNAVLRFFSWVGKR 674

Query: 144 KKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGL 201
             Y H  E +   I++     D  ++R +F+E++ +G L+T+     +I  +G  GL
Sbjct: 675 NGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGL 728

[Close]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match: tr|A0A0A0K5P5|A0A0A0K5P5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047320 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.6e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60
           MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE
Sbjct: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60

Query: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120
           WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV
Sbjct: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120

Query: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180
           LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG
Sbjct: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180

Query: 181 LLMTESAANSLIKSFGNLGLVEELLW 207
           LLMTESAANSLIKSFGNLGLVEELLW
Sbjct: 181 LLMTESAANSLIKSFGNLGLVEELLW 206

[Close]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match: tr|A0A1S3C0U2|A0A1S3C0U2_CUCME (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495528 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 8.1e-101
Identity = 188/206 (91.26%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60
           MRR+LLRPSF CSSSR L L D KSYSLY NGKLSS  SDYGFSQNFRFVFTNTLLPPPE
Sbjct: 1   MRRSLLRPSFLCSSSRSLRLPDHKSYSLYENGKLSSTSSDYGFSQNFRFVFTNTLLPPPE 60

Query: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120
           WIEPFVDVSDVISSS PLDPSPWV QILNLLDGSSNMEHNLDSFCRKFF+KLSPNFVTFV
Sbjct: 61  WIEPFVDVSDVISSSSPLDPSPWVTQILNLLDGSSNMEHNLDSFCRKFFIKLSPNFVTFV 120

Query: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180
           LQSVELREKPE+AVRFFFWAGKQKKYVHKIEC+VSLIELLTFSADLVKIR VFFELKD+ 
Sbjct: 121 LQSVELREKPEIAVRFFFWAGKQKKYVHKIECYVSLIELLTFSADLVKIRSVFFELKDKD 180

Query: 181 LLMTESAANSLIKSFGNLGLVEELLW 207
           LLMTE AANSLIKSFGNLGLVEELLW
Sbjct: 181 LLMTELAANSLIKSFGNLGLVEELLW 206

[Close]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match: tr|A0A2P5F367|A0A2P5F367_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_120660 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 132/210 (62.86%), Postives = 156/210 (74.29%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNG----KLSSKGSDYGFSQNFRFVFTNTLL 60
           MRR L R  F  S++   H   P S   Y NG    K S+  +   FS N R+VFTN+ L
Sbjct: 1   MRRTLYRFRFSLSAT---HRSLPSSSCPYENGGSLPKASNSPATSSFSSNPRWVFTNSSL 60

Query: 61  PPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNF 120
           PPPEW+EP  DVS+VISSS+ L+PSPWVA ILN+LDGSSNME NLDSFC+ F +KLSPNF
Sbjct: 61  PPPEWVEPLNDVSEVISSSRDLEPSPWVAHILNILDGSSNMEANLDSFCKTFLIKLSPNF 120

Query: 121 VTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL 180
           V FVL+SVELR+KPE A+RFF+WAGKQKKY HK+EC+VSLI+LL+   +L   R VF EL
Sbjct: 121 VAFVLRSVELRQKPETAMRFFYWAGKQKKYSHKLECYVSLIDLLSLCGELDCTRHVFCEL 180

Query: 181 KDRGLLMTESAANSLIKSFGNLGLVEELLW 207
           K    LMT SAANS IKSFG+LG+VEELLW
Sbjct: 181 KGMSFLMTISAANSFIKSFGSLGMVEELLW 207

[Close]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match: tr|A0A2P5BQS3|A0A2P5BQS3_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_218620 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-61
Identity = 129/210 (61.43%), Postives = 155/210 (73.81%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNG----KLSSKGSDYGFSQNFRFVFTNTLL 60
           MRR L R  F  S++   H   P S   Y NG    K S+  +   FS N R+VFTN+ L
Sbjct: 42  MRRTLYRFRFSLSAT---HRSLPSSSCSYKNGGSLPKASNSPATSSFSSNPRWVFTNSSL 101

Query: 61  PPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNF 120
           PPPEW+EP  DVS+V+SSS+ L+ SPWVA ILN+LDGSSNME NLDSFC  F +KLSPNF
Sbjct: 102 PPPEWVEPLNDVSEVVSSSRDLETSPWVAHILNILDGSSNMEANLDSFCITFLIKLSPNF 161

Query: 121 VTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL 180
           V FVL+SVELR+KP++A+RFF+WAGKQKKY HK+EC+VSLI+LL+   +L   R VF EL
Sbjct: 162 VAFVLRSVELRQKPDIAMRFFYWAGKQKKYSHKLECYVSLIDLLSLCGELDCTRHVFCEL 221

Query: 181 KDRGLLMTESAANSLIKSFGNLGLVEELLW 207
           K    LMT SAANS IKSFG+LG+VEELLW
Sbjct: 222 KGMSFLMTISAANSFIKSFGSLGMVEELLW 248

[Close]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match: tr|A0A1U8HJR8|A0A1U8HJR8_GOSHI (pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107886753 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.7e-54
Identity = 117/211 (55.45%), Postives = 151/211 (71.56%), Query Frame = 0 

Query: 1   MRRALLRPSFRCSSSR--------PLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFT 60
           MRR L++     S SR        P   +DP    L  + KLSS      FS   RF+FT
Sbjct: 1   MRRTLVKSPIFFSISRLQSPPLSSPYRNVDP----LPNSPKLSSNSLSISFS---RFMFT 60

Query: 61  NTLLPPPEWIEPFVDVSDVISSS-QPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVK 120
            + +PPPEWIEPF+++S + S++ Q L PSPWV+QILNLLDGSSNME NLDSFC KF ++
Sbjct: 61  PSYVPPPEWIEPFINLSGLSSTNPQDLQPSPWVSQILNLLDGSSNMESNLDSFCHKFLIR 120

Query: 121 LSPNFVTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRL 180
           LSPNFV+F L SVE++ KP+VA+RFF WA KQKKY HK+EC+VSLI +L  + DLVK+R 
Sbjct: 121 LSPNFVSFALSSVEIQNKPDVALRFFTWAAKQKKYTHKLECYVSLINVLALANDLVKVRY 180

Query: 181 VFFELKDRGLLMTESAANSLIKSFGNLGLVE 203
           +F +LK+ G ++T S+ANSLIK+FG LG+VE
Sbjct: 181 LFGQLKELGFVLTMSSANSLIKNFGELGMVE 204

The following BLAST results are available for this feature:
BLAST of CsaV3_7G004270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137016.22.4e-112100.00PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial ... [more]
XP_008455340.11.2e-10091.26PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial ... [more]
XP_022953016.19.4e-9384.76pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucurbita ... [more]
XP_022969029.11.0e-9183.81pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucurbita ... [more]
XP_022148014.18.8e-8378.92pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Momordica ... [more]
BLAST of CsaV3_7G004270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03560.11.7e-5658.82Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G06400.11.9e-0727.35Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G73710.19.0e-0528.23Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G30290.19.0e-0527.19Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_7G004270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LR67|PPR9_ARATH3.1e-5558.82Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidop... [more]
sp|Q9FNG8|PP366_ARATH3.5e-0627.35Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS... [more]
BLAST of CsaV3_7G004270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5P5|A0A0A0K5P5_CUCSA1.6e-112100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047320 PE=4 SV=1[more]
tr|A0A1S3C0U2|A0A1S3C0U2_CUCME8.1e-10191.26pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucumis ... [more]
tr|A0A2P5F367|A0A2P5F367_9ROSA1.1e-6262.86Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|A0A2P5BQS3|A0A2P5BQS3_PARAD3.7e-6161.43Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A1U8HJR8|A0A1U8HJR8_GOSHI5.7e-5455.45pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like OS=Gos... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G004270.1CsaV3_7G004270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 422..494
e-value: 4.7E-20
score: 73.9
coord: 352..421
e-value: 2.7E-23
score: 84.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 84..234
e-value: 7.3E-18
score: 66.5
coord: 235..345
e-value: 4.0E-29
score: 103.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 495..634
e-value: 1.0E-19
score: 73.2
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 424..457
e-value: 3.5E-8
score: 32.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 464..512
e-value: 4.0E-14
score: 52.4
coord: 359..407
e-value: 9.3E-19
score: 67.3
coord: 253..300
e-value: 2.5E-17
score: 62.7
coord: 187..231
e-value: 3.5E-8
score: 33.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 291..322
e-value: 3.2E-5
score: 21.8
coord: 433..464
e-value: 2.3E-9
score: 34.9
coord: 466..496
e-value: 7.7E-9
score: 33.2
coord: 189..219
e-value: 6.7E-4
score: 17.7
coord: 221..255
e-value: 6.8E-4
score: 17.6
coord: 362..395
e-value: 3.2E-11
score: 40.7
coord: 396..425
e-value: 1.7E-5
score: 22.7
coord: 501..534
e-value: 1.3E-6
score: 26.2
coord: 326..359
e-value: 1.1E-4
score: 20.1
coord: 256..289
e-value: 1.2E-10
score: 38.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 327..356
e-value: 2.0E-4
score: 21.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 429..463
score: 12.178
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..218
score: 10.589
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..253
score: 9.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 569..602
score: 5.283
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 289..323
score: 10.15
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 534..568
score: 8.122
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..428
score: 11.97
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 464..498
score: 12.485
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 359..393
score: 14.14
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 499..533
score: 11.641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 14.25
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 9.997
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 461..621
NoneNo IPR availablePANTHERPTHR24015:SF372SUBFAMILY NOT NAMEDcoord: 15..394
NoneNo IPR availablePANTHERPTHR24015:SF372SUBFAMILY NOT NAMEDcoord: 461..621
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 15..394
NoneNo IPR availablePANTHERPTHR24015:SF372SUBFAMILY NOT NAMEDcoord: 395..459
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 395..459
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 292..391
coord: 428..533

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G004270CSPI07G04450Wild cucumber (PI 183967)cpicucB415
CsaV3_7G004270Cucsa.147840Cucumber (Gy14) v1cgycucB226
CsaV3_7G004270CmaCh19G009770Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G004270CmoCh19G010090Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G004270Cp4.1LG15g07960Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G004270CsGy7G004050Cucumber (Gy14) v2cgybcucB348
CsaV3_7G004270Carg19225Silver-seed gourdcarcucB0915
CsaV3_7G004270Cla007738Watermelon (97103) v1cucwmB626
CsaV3_7G004270MELO3C018751Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G004270ClCG02G001180Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G004270Lsi11G015320Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G004270MELO3C018751.2Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G004270Cla97C02G027600Watermelon (97103) v2cucwmbB549
CsaV3_7G004270Bhi05G001591Wax gourdcucwgoB687
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G004270Cucumber (Chinese Long) v3cuccucB213
CsaV3_7G004270Silver-seed gourdcarcucB0034
CsaV3_7G004270Silver-seed gourdcarcucB0176
CsaV3_7G004270Silver-seed gourdcarcucB0758
CsaV3_7G004270Silver-seed gourdcarcucB0993
CsaV3_7G004270Cucumber (Gy14) v1cgycucB029
CsaV3_7G004270Cucumber (Gy14) v1cgycucB177
CsaV3_7G004270Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G004270Cucurbita maxima (Rimu)cmacucB0269
CsaV3_7G004270Cucurbita maxima (Rimu)cmacucB0511
CsaV3_7G004270Cucurbita maxima (Rimu)cmacucB0768
CsaV3_7G004270Cucurbita maxima (Rimu)cmacucB1040
CsaV3_7G004270Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G004270Cucurbita moschata (Rifu)cmocucB0259
CsaV3_7G004270Cucurbita moschata (Rifu)cmocucB0498
CsaV3_7G004270Cucurbita moschata (Rifu)cmocucB0672
CsaV3_7G004270Cucurbita moschata (Rifu)cmocucB0754
CsaV3_7G004270Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G004270Cucurbita pepo (Zucchini)cpecucB0656
CsaV3_7G004270Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G004270Cucurbita pepo (Zucchini)cpecucB0946
CsaV3_7G004270Wild cucumber (PI 183967)cpicucB373
CsaV3_7G004270Bottle gourd (USVL1VR-Ls)cuclsiB522
CsaV3_7G004270Watermelon (Charleston Gray)cucwcgB561
CsaV3_7G004270Watermelon (Charleston Gray)cucwcgB564
CsaV3_7G004270Watermelon (97103) v1cucwmB623
CsaV3_7G004270Watermelon (97103) v1cucwmB627
CsaV3_7G004270Watermelon (97103) v2cucwmbB534
CsaV3_7G004270Watermelon (97103) v2cucwmbB542
CsaV3_7G004270Wax gourdcucwgoB707