CsaV3_7G004250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G004250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 3086756 .. 3088169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGGGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGGTCTCTTTTAACGTTGCTTTCAAAAAGAAAGAAAACAAAGGGCTTTTTGTTGGGCTGAGTGATGATGATGATTTTTCTTTAGTAAATATTGAGAAAATCAAAATTATATATATAAAAATATATACTATACTACTTACTTTCAAAGCTATGTTTATAATATATGTCGATGGAATGAAGTTATGAAGAGAATGTTTAAGATTTAAAAAAAAAAAAAGGTTTGATGTTTTGAAGTTTTGATTGAAGTATATATTGTTGAATGAAAAGGATAAAATAAAAACATGTGAATTGATTGGAAATGTCATGCTTAATTGATTACATTGCATTGAGAATTGAAACTTGTTTAATTATTGTATTCTTAAGAATAATTTAGTCACTTGACATGTTGATTATAATCTTTTAAGTTTGCTCTAAGTGATGATGTTCACATTTGACTCTTGCACCATACCTTACTTATAATGAGGTTTTGATAATCATTACATTTTAAAACATTATACTTTTAACCTTCCAACTTTTGGACATGTGAAAATAGTACAAGTATCCTCTTACTAGGTATTAGAAACCTCAATCACCAATTATCTATACCGTTTTACTAGGTAGTTTTGATTTTCAAATAATAACTCTTTTTTAGTTAGATTTTAAAATTAGTTTCATAGTTAGAATCTTAGTTCCTACAATAATGATAGCTTTTCCTATCTTCTTTTATTTTTCTATTTCAAACATAACTCCATCTTCAAACATAAACTTCCTAATTCTAATCCTTAAAAACATAGCACAATGTACCCCAAACACAAGTTCCAAAAGTTAGGTAAGAATATATGAAGTAATGTGATAATATACCAAACTTTTGAAGTACACATTTTAAAATGTAAATTGTGGAAAGAAAAAAAAAAGTAAATTTTCAATCCCATAATTCCACAGAGACAAACACATTGTGAGCAGTAGTAATACAAAAAATTCAGAGAGATCTGGTAGAGAGAAATGGGCACGTGCTACCAAACACGTGTAAGCACAGAAATTCGTCGTTCAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAAAGGCCACGTAGGCAACGTCAGGGGGACCACATCGCCAACGTGGGCATGGAAGTCTCGCCATGTGGCGGTGTTGCATTGGGGGAGTGGAGGTATGAGTCAGCGGAGGCAGAATCAGGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGATGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGGGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGGTTTTAG

mRNA sequence

ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGGGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAAAGGCCACGTAGGCAACGTCAGGGGGACCACATCGCCAACGTGGGCATGGAAGTCTCGCCATGTGGCGGTGTTGCATTGGGGGAGTGGAGGTATGAGTCAGCGGAGGCAGAATCAGGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGATGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGGGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGGTTTTAG

Coding sequence (CDS)

ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGGGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAAAGGCCACGTAGGCAACGTCAGGGGGACCACATCGCCAACGTGGGCATGGAAGTCTCGCCATGTGGCGGTGTTGCATTGGGGGAGTGGAGGTATGAGTCAGCGGAGGCAGAATCAGGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGATGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGGGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGGTTTTAG

Protein sequence

MCNEIIRAKKKEYEMGRRNGDFAEEEDRFAEQVIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEIDERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF
Homology
[Close]
BLAST of CsaV3_7G004250 vs. NCBI nr
Match: KGN43594.1 (hypothetical protein Csa_7G047300 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 33  VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID 92
           VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID
Sbjct: 17  VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID 76

Query: 93  ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF 129
           ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF
Sbjct: 77  ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF 112

[Close]
BLAST of CsaV3_7G004250 vs. TrEMBL
Match: tr|A0A0A0K3Q5|A0A0A0K3Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047300 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.1e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 33  VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID 92
           VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID
Sbjct: 17  VIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEID 76

Query: 93  ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF 129
           ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF
Sbjct: 77  ERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKGF 112

The following BLAST results are available for this feature:
BLAST of CsaV3_7G004250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43594.11.4e-48100.00hypothetical protein Csa_7G047300 [Cucumis sativus][more]
BLAST of CsaV3_7G004250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G004250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G004250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3Q5|A0A0A0K3Q5_CUCSA9.1e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G004250.1CsaV3_7G004250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G004250CSPI07G04430Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G004250Cucumber (Chinese Long) v3cuccucB213
CsaV3_7G004250Silver-seed gourdcarcucB0034
CsaV3_7G004250Silver-seed gourdcarcucB0176
CsaV3_7G004250Silver-seed gourdcarcucB0758
CsaV3_7G004250Silver-seed gourdcarcucB0915
CsaV3_7G004250Silver-seed gourdcarcucB0993
CsaV3_7G004250Cucumber (Gy14) v2cgybcucB348
CsaV3_7G004250Cucumber (Gy14) v1cgycucB029
CsaV3_7G004250Cucumber (Gy14) v1cgycucB177
CsaV3_7G004250Cucumber (Gy14) v1cgycucB226
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB0269
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB0511
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB0768
CsaV3_7G004250Cucurbita maxima (Rimu)cmacucB1040
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0259
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0498
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0672
CsaV3_7G004250Cucurbita moschata (Rifu)cmocucB0754
CsaV3_7G004250Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G004250Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G004250Cucurbita pepo (Zucchini)cpecucB0656
CsaV3_7G004250Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G004250Cucurbita pepo (Zucchini)cpecucB0946
CsaV3_7G004250Wild cucumber (PI 183967)cpicucB373
CsaV3_7G004250Bottle gourd (USVL1VR-Ls)cuclsiB522
CsaV3_7G004250Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G004250Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G004250Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G004250Watermelon (Charleston Gray)cucwcgB580
CsaV3_7G004250Watermelon (Charleston Gray)cucwcgB561
CsaV3_7G004250Watermelon (Charleston Gray)cucwcgB564
CsaV3_7G004250Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G004250Watermelon (97103) v1cucwmB609
CsaV3_7G004250Watermelon (97103) v1cucwmB623
CsaV3_7G004250Watermelon (97103) v1cucwmB626
CsaV3_7G004250Watermelon (97103) v1cucwmB627
CsaV3_7G004250Watermelon (97103) v2cucwmbB534
CsaV3_7G004250Watermelon (97103) v2cucwmbB542
CsaV3_7G004250Watermelon (97103) v2cucwmbB549
CsaV3_7G004250Watermelon (97103) v2cucwmbB559
CsaV3_7G004250Wax gourdcucwgoB687
CsaV3_7G004250Wax gourdcucwgoB707