CsaV3_7G003070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G003070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 2298714 .. 2299238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATCCTGAATATCCTTGTTAGGGGTTGTCGTGGTGATGATGAAAACCTTTCTGTTGAGGGAGGTGTGTTCCGTGACGGGGTTGGCTCCCCTTTAGATGGAAACCTTTATGGAAAGCTATATGGAAACTTGAGGTGCCCCTAAGGGTGAACGCTGTCTCCGACTCCCTACCTTTGCCATAATTTGTAAAAAAATGGAATCTCTATTAACCCGCTTTGTTTTCTTTGTAGGAAATGTTTTATGGGCTGCGATGCAAGTTTTGTAGAAGCATTTGATTATTATTCTTCCCTTCCTTATTTGGGCTTTTTGGCGATTTCAAGAATTGTTGGAGTCTGTCGAACTGCTGATATAGGGTGGTTTCTACGACCGAGGTGCGTAACAGGGTTTGCGGCTATCCTACTGTGGGATGTGTGGAATTACGGAAATGTGGTGAAGCGTTGCGGGTTCGAGCCTGATCGTGATGCTCTGTTGAGAAGAATCTTCTTTACACTTGAAGGGAGATGGGGCTCCATTTTCGCTTAG

mRNA sequence

ATGACTATCCTGAATATCCTTGTTAGGGGTTGTCGTGGTGATGATGAAAACCTTTCTGTTGAGGGAGGTGTGTTCCGTGACGGGGTTGGCTCCCCTTTAGATGGAAACCTTTATGGAAAGCTATATGGAAACTTGAGGAAATGTTTTATGGGCTGCGATGCAAGTTTTGTAGAAGCATTTGATTATTATTCTTCCCTTCCTTATTTGGGCTTTTTGGCGATTTCAAGAATTGTTGGAGTCTGTCGAACTGCTGATATAGGGTGGTTTCTACGACCGAGGTGCGTAACAGGGTTTGCGGCTATCCTACTGTGGGATGTGTGGAATTACGGAAATGTGGTGAAGCGTTGCGGGTTCGAGCCTGATCGTGATGCTCTGTTGAGAAGAATCTTCTTTACACTTGAAGGGAGATGGGGCTCCATTTTCGCTTAG

Coding sequence (CDS)

ATGACTATCCTGAATATCCTTGTTAGGGGTTGTCGTGGTGATGATGAAAACCTTTCTGTTGAGGGAGGTGTGTTCCGTGACGGGGTTGGCTCCCCTTTAGATGGAAACCTTTATGGAAAGCTATATGGAAACTTGAGGAAATGTTTTATGGGCTGCGATGCAAGTTTTGTAGAAGCATTTGATTATTATTCTTCCCTTCCTTATTTGGGCTTTTTGGCGATTTCAAGAATTGTTGGAGTCTGTCGAACTGCTGATATAGGGTGGTTTCTACGACCGAGGTGCGTAACAGGGTTTGCGGCTATCCTACTGTGGGATGTGTGGAATTACGGAAATGTGGTGAAGCGTTGCGGGTTCGAGCCTGATCGTGATGCTCTGTTGAGAAGAATCTTCTTTACACTTGAAGGGAGATGGGGCTCCATTTTCGCTTAG

Protein sequence

MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAFDYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEPDRDALLRRIFFTLEGRWGSIFA
Homology
[Close]
BLAST of CsaV3_7G003070 vs. NCBI nr
Match: XP_011658683.1 (PREDICTED: uncharacterized protein LOC105436073 [Cucumis sativus] >KGN43467.1 hypothetical protein Csa_7G038180 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 8.9e-81
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF 60
           MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF
Sbjct: 1   MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF 60

Query: 61  DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP 120
           DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP
Sbjct: 61  DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP 120

Query: 121 DRDALLRRIFFTLEGRWGSIFA 143
           DRDALLRRIFFTLEGRWGSIFA
Sbjct: 121 DRDALLRRIFFTLEGRWGSIFA 142

[Close]
BLAST of CsaV3_7G003070 vs. TrEMBL
Match: tr|A0A0A0K5B7|A0A0A0K5B7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038180 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.9e-81
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF 60
           MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF
Sbjct: 1   MTILNILVRGCRGDDENLSVEGGVFRDGVGSPLDGNLYGKLYGNLRKCFMGCDASFVEAF 60

Query: 61  DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP 120
           DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP
Sbjct: 61  DYYSSLPYLGFLAISRIVGVCRTADIGWFLRPRCVTGFAAILLWDVWNYGNVVKRCGFEP 120

Query: 121 DRDALLRRIFFTLEGRWGSIFA 143
           DRDALLRRIFFTLEGRWGSIFA
Sbjct: 121 DRDALLRRIFFTLEGRWGSIFA 142

The following BLAST results are available for this feature:
BLAST of CsaV3_7G003070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658683.18.9e-81100.00PREDICTED: uncharacterized protein LOC105436073 [Cucumis sativus] >KGN43467.1 hy... [more]
BLAST of CsaV3_7G003070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5B7|A0A0A0K5B7_CUCSA5.9e-81100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G003070.1CsaV3_7G003070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G003070CSPI07G03180Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G003070Wax gourdcucwgoB694
CsaV3_7G003070Wax gourdcucwgoB695
CsaV3_7G003070Wax gourdcucwgoB703
CsaV3_7G003070Cucumber (Chinese Long) v3cuccucB099
CsaV3_7G003070Silver-seed gourdcarcucB0232
CsaV3_7G003070Silver-seed gourdcarcucB1114
CsaV3_7G003070Cucumber (Gy14) v2cgybcucB094
CsaV3_7G003070Cucumber (Gy14) v2cgybcucB348
CsaV3_7G003070Cucumber (Gy14) v2cgybcucB349
CsaV3_7G003070Cucumber (Gy14) v1cgycucB292
CsaV3_7G003070Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G003070Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G003070Cucurbita maxima (Rimu)cmacucB0684
CsaV3_7G003070Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G003070Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G003070Cucurbita moschata (Rifu)cmocucB0672
CsaV3_7G003070Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G003070Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G003070Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G003070Wild cucumber (PI 183967)cpicucB116
CsaV3_7G003070Wild cucumber (PI 183967)cpicucB419
CsaV3_7G003070Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G003070Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G003070Melon (DHL92) v3.5.1cucmeB547
CsaV3_7G003070Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G003070Melon (DHL92) v3.6.1cucmedB535
CsaV3_7G003070Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G003070Watermelon (Charleston Gray)cucwcgB570
CsaV3_7G003070Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G003070Watermelon (97103) v1cucwmB633
CsaV3_7G003070Watermelon (97103) v1cucwmB634
CsaV3_7G003070Watermelon (97103) v2cucwmbB548
CsaV3_7G003070Watermelon (97103) v2cucwmbB549