CsaV3_7G002920 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G002920
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 2213312 .. 2214441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCATCTCATCTTCAAATACTTTTTATTATTCCAATTTACAAAGATAATGAATTCCAAGCCTTTCATCCTCCTCGGTCTTCTGTTCTCCATTGTCATCCTCTCTTCAGAGGATGTAAACACGGTTACGGCTAGGGATGTAAAATTCAGTGAGTTTTACTTCATATCCACACCTTTATTAGATGATGATACATATTGCAATAATGTAGTTATTATATTACTTCTACTCGTTTCATTAGTGTCTTCTCATATATATGTTGATTCTAATGTAATTTAACATTATATATTTGTGTAGAAGAAGCTATTATGGAAACTGATGAACTTCATGACGAAGTCAACCGCCATGGTTTTGGAAGAGGACAAGCTAGATTCCTCCAACAATGCCTCCATGGTTGCAGGAACCGTTGTTGTAGCTGCGTCCGTGGTCGTTGCGTCCATTGCTGCTAGATTGGCTGGTGAGGCCGTGGTTGATGATGTAGAACCTCAAGCTAAAGGCATACCAACTAAACGTATTTTGTTACTTCAAATAATGGCCTTGATTTCTCAAGTTGATATGTATCGGTATGTATATGTTTGTTGTTTAATGTTTTTAAGTAATGAATAAATGCTTTCTTAAAAAAGGAAAAAAAAAAAATAGTGATGAATAAACGCATAAGCTTGAAATTAATTGTGTGTATTTAAAACTTTTAAGTAAAATTCGAATTGAGATATAATTTTTAAAAAAAAAATGTTGCTCAATTCAAACAGTTCATGTATCAACCAGTTGTAAATTTTGTTATGCTTTGATAAGTCATTTCCAATAGTCCGATTGAATCTCATTACACATATATGGACTAAATGAATCAATCAACGGTATCCATCACTACATTCTTAGTCATAGTGACAAGATCGGGTGGAGCACATTAAACATGTGAATTGCTGAATCAATTAAACAGTTTAAAGCCAAGGACAATAACCAGTGATGGAGGATTTTGTAGTGATTGTTGCAAACTAAAGTAAATTTGTCACGAAATAAATTGGAATTGAATTCGGATAGTTAAAAGCTCTTGCCTAGGTTTTTGAGTTGTTTCCATATCTTGCAACTTGATCACACGACTCCATTGATTATTCTTGTATCAATTAATCTTGGC

mRNA sequence

ATGAACTTCATGACGAAGTCAACCGCCATGGTTTTGGAAGAGGACAAGCTAGATTCCTCCAACAATGCCTCCATGGTTGCAGGAACCGTTGTTGTAGCTGCGTCCGTGGTCGTTGCGTCCATTGCTGCTAGATTGGCTGGTGAGGCCGTGGTTGATGATGTAGAACCTCAAGCTAAAGGCATACCAACTAAACGTATTTTGTTACTTCAAATAATGGCCTTGATTTCTCAAGTTGATATGTATCGGTATGTATATGTTTGTTGTTTAATGTTTTTAAGTAATGAATAA

Coding sequence (CDS)

ATGAACTTCATGACGAAGTCAACCGCCATGGTTTTGGAAGAGGACAAGCTAGATTCCTCCAACAATGCCTCCATGGTTGCAGGAACCGTTGTTGTAGCTGCGTCCGTGGTCGTTGCGTCCATTGCTGCTAGATTGGCTGGTGAGGCCGTGGTTGATGATGTAGAACCTCAAGCTAAAGGCATACCAACTAAACGTATTTTGTTACTTCAAATAATGGCCTTGATTTCTCAAGTTGATATGTATCGGTATGTATATGTTTGTTGTTTAATGTTTTTAAGTAATGAATAA

Protein sequence

MNFMTKSTAMVLEEDKLDSSNNASMVAGTVVVAASVVVASIAARLAGEAVVDDVEPQAKGIPTKRILLLQIMALISQVDMYRYVYVCCLMFLSNE

Homology

[Close]

BLAST of CsaV3_7G002920 vs. NCBI nr
Match: KGN43450.1 (hypothetical protein Csa_7G037540 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MNFMTKSTAMVLEEDKLDSSNNASMVXXXXXXXXXXXXXXIAARLAGEAVVDDVEPQAKG 60
           MNFMTKSTAMVLEEDKLDS       XXXXXXXXXXXXXX AARLAGEAVVDDVEPQAKG
Sbjct: 60  MNFMTKSTAMVLEEDKLDSXXXXXXXXXXXXXXXXXXXXXXAARLAGEAVVDDVEPQAKG 119

Query: 61  IPTKRILLLQIMALISQVDMYRY 84
           IPTKRILLLQIMALISQVDMYR+
Sbjct: 120 IPTKRILLLQIMALISQVDMYRH 142

[Close]

BLAST of CsaV3_7G002920 vs. TrEMBL
Match: tr|A0A0A0K1A3|A0A0A0K1A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037540 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-20
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MNFMTKSTAMVLEEDKLDSSNNASMVXXXXXXXXXXXXXXIAARLAGEAVVDDVEPQAKG 60
           MNFMTKSTAMVLEEDKLDS       XXXXXXXXXXXXXX AARLAGEAVVDDVEPQAKG
Sbjct: 60  MNFMTKSTAMVLEEDKLDSXXXXXXXXXXXXXXXXXXXXXXAARLAGEAVVDDVEPQAKG 119

Query: 61  IPTKRILLLQIMALISQVDMYRY 84
           IPTKRILLLQIMALISQVDMYR+
Sbjct: 120 IPTKRILLLQIMALISQVDMYRH 142

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43450.1	7.7e-20	89.16	hypothetical protein Csa_7G037540 [Cucumis sativus]	[more]

BLAST of CsaV3_7G002920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K1A3\|A0A0A0K1A3_CUCSA	5.1e-20	89.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037540 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002920.1	CsaV3_7G002920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G002920	Cucsa.181030	Cucumber (Gy14) v1	cgycucB292
CsaV3_7G002920	CsGy7G002710	Cucumber (Gy14) v2	cgybcucB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G002920	Wax gourd	cucwgoB694
CsaV3_7G002920	Wax gourd	cucwgoB695
CsaV3_7G002920	Wax gourd	cucwgoB703
CsaV3_7G002920	Cucumber (Chinese Long) v3	cuccucB099
CsaV3_7G002920	Silver-seed gourd	carcucB0232
CsaV3_7G002920	Silver-seed gourd	carcucB1114
CsaV3_7G002920	Cucumber (Gy14) v2	cgybcucB094
CsaV3_7G002920	Cucumber (Gy14) v2	cgybcucB349
CsaV3_7G002920	Cucurbita maxima (Rimu)	cmacucB0176
CsaV3_7G002920	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G002920	Cucurbita moschata (Rifu)	cmocucB0155
CsaV3_7G002920	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G002920	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G002920	Cucurbita pepo (Zucchini)	cpecucB0367
CsaV3_7G002920	Cucurbita pepo (Zucchini)	cpecucB0863
CsaV3_7G002920	Wild cucumber (PI 183967)	cpicucB116
CsaV3_7G002920	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G002920	Wild cucumber (PI 183967)	cpicucB419
CsaV3_7G002920	Bottle gourd (USVL1VR-Ls)	cuclsiB521
CsaV3_7G002920	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G002920	Melon (DHL92) v3.5.1	cucmeB547
CsaV3_7G002920	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G002920	Melon (DHL92) v3.6.1	cucmedB535
CsaV3_7G002920	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G002920	Watermelon (Charleston Gray)	cucwcgB570
CsaV3_7G002920	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G002920	Watermelon (97103) v1	cucwmB633
CsaV3_7G002920	Watermelon (97103) v1	cucwmB634
CsaV3_7G002920	Watermelon (97103) v2	cucwmbB548
CsaV3_7G002920	Watermelon (97103) v2	cucwmbB549