CsaV3_7G002520 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G002520
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 1978963 .. 1979313 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAACGACTTCAGATTTATTGCATCACTCTGTTTAATATGTTCGGTTGCATCTGTGTTACAAACTACATTGTAATAACGTTGTTTGTGCAGTATGGTTTGGCTTTCAACAGGCATTTAGTCAGCAATGCTATGAAACGCATTGGACAGATGAGAGATGAAAGCAGAATTACAAAGGCAACCATCAACGAAAACGCCATCAATGTAATCAATATGTTAAATCTCTGTAGTATGTATTCTCAGCTAAATCAGTGTTCTGCCTCTCGATTTAAGGTAACTTGGTTTCGTCTGCTCGGGCTCGATTATGTGAGTCAATGCAACCTAAAGGCTTTCTCAGGGACTAACTAA

mRNA sequence

ATGTATCAACGACTTCAGATTTATTGCATCACTCTGTTTAATATGTTCGGTTGCATCTGTGTTACAAACTACATTGTAATAACGTTGTTTGTGCAGTATGGTTTGGCTTTCAACAGGCATTTAGTCAGCAATGCTATGAAACGCATTGGACAGATGAGAGATGAAAGCAGAATTACAAAGGCAACCATCAACGAAAACGCCATCAATGTAATCAATATGTTAAATCTCTGTAGTATGTATTCTCAGCTAAATCAGTGTTCTGCCTCTCGATTTAAGGTAACTTGGTTTCGTCTGCTCGGGCTCGATTATGTGAGTCAATGCAACCTAAAGGCTTTCTCAGGGACTAACTAA

Coding sequence (CDS)

ATGTATCAACGACTTCAGATTTATTGCATCACTCTGTTTAATATGTTCGGTTGCATCTGTGTTACAAACTACATTGTAATAACGTTGTTTGTGCAGTATGGTTTGGCTTTCAACAGGCATTTAGTCAGCAATGCTATGAAACGCATTGGACAGATGAGAGATGAAAGCAGAATTACAAAGGCAACCATCAACGAAAACGCCATCAATGTAATCAATATGTTAAATCTCTGTAGTATGTATTCTCAGCTAAATCAGTGTTCTGCCTCTCGATTTAAGGTAACTTGGTTTCGTCTGCTCGGGCTCGATTATGTGAGTCAATGCAACCTAAAGGCTTTCTCAGGGACTAACTAA

Protein sequence

MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITKATINENAINVINMLNLCSMYSQLNQCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN

Homology

[Close]

BLAST of CsaV3_7G002520 vs. NCBI nr
Match: KGN43410.1 (hypothetical protein Csa_7G031710 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK 60
           MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK
Sbjct: 1   MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK 60

Query: 61  ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN 117
           ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN
Sbjct: 61  ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN 116

[Close]

BLAST of CsaV3_7G002520 vs. TrEMBL
Match: tr|A0A0A0K143|A0A0A0K143_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031710 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.5e-47
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK 60
           MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK
Sbjct: 1   MYQRLQIYCITLFNMFGCICVTNYIVITLFVQYGLAFNRHLVSNAMKRIGQMRDESRITK 60

Query: 61  ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN 117
           ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN
Sbjct: 61  ATINENAIXXXXXXXXXXXXXXXXXCSASRFKVTWFRLLGLDYVSQCNLKAFSGTN 116

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43410.1	5.3e-47	100.00	hypothetical protein Csa_7G031710 [Cucumis sativus]	[more]

BLAST of CsaV3_7G002520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K143\|A0A0A0K143_CUCSA	3.5e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031710 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002520.1	CsaV3_7G002520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G002520	Wax gourd	cucwgoB695
CsaV3_7G002520	Wax gourd	cucwgoB703
CsaV3_7G002520	Cucumber (Chinese Long) v3	cuccucB214
CsaV3_7G002520	Silver-seed gourd	carcucB0232
CsaV3_7G002520	Silver-seed gourd	carcucB0386
CsaV3_7G002520	Silver-seed gourd	carcucB1114
CsaV3_7G002520	Cucumber (Gy14) v2	cgybcucB306
CsaV3_7G002520	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G002520	Cucumber (Gy14) v1	cgycucB116
CsaV3_7G002520	Cucumber (Gy14) v1	cgycucB160
CsaV3_7G002520	Cucurbita maxima (Rimu)	cmacucB0176
CsaV3_7G002520	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G002520	Cucurbita maxima (Rimu)	cmacucB0687
CsaV3_7G002520	Cucurbita moschata (Rifu)	cmocucB0155
CsaV3_7G002520	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G002520	Cucurbita moschata (Rifu)	cmocucB0671
CsaV3_7G002520	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G002520	Cucurbita pepo (Zucchini)	cpecucB0367
CsaV3_7G002520	Cucurbita pepo (Zucchini)	cpecucB0863
CsaV3_7G002520	Wild cucumber (PI 183967)	cpicucB375
CsaV3_7G002520	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G002520	Bottle gourd (USVL1VR-Ls)	cuclsiB521
CsaV3_7G002520	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G002520	Melon (DHL92) v3.5.1	cucmeB534
CsaV3_7G002520	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G002520	Melon (DHL92) v3.6.1	cucmedB521
CsaV3_7G002520	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G002520	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G002520	Watermelon (97103) v1	cucwmB634
CsaV3_7G002520	Watermelon (97103) v2	cucwmbB549