CsaV3_7G002400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionE3 ubiquitin-protein ligase RHA1B
Locationchr7 : 1884966 .. 1885430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA

mRNA sequence

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Homology
[Close]
BLAST of CsaV3_7G002400 vs. NCBI nr
Match: XP_004144555.2 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativus] >KGN43397.1 hypothetical protein Csa_7G031580 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 7.4e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. NCBI nr
Match: XP_011658651.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.8e-79
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153

[Close]
BLAST of CsaV3_7G002400 vs. NCBI nr
Match: XP_008462033.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 2.2e-77
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of CsaV3_7G002400 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 8.5e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 8.5e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. TAIR10
Match: AT2G04240.1 (RING/U-box superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36
Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPS----TVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS PS             
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSXXXXXXXXXXXXX 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
              SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  XXXSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of CsaV3_7G002400 vs. TAIR10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]
BLAST of CsaV3_7G002400 vs. TAIR10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4)

HSP 1 Score: 67.4 bits (163), Expect = 8.9e-12
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 82  PRIRFDKVP--SSERREHDCSVCLTQFEPESAINHLS-CGHLFHTDCLEKWLDYWNITCP 141
           P  +F  V   SS     DC+VCL++FEPE  +  L  C H FH DC++ WL   N TCP
Sbjct: 98  PIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWL-VSNQTCP 157

Query: 142 LCRTPLMSEE 149
           LCR+PL + E
Sbjct: 158 LCRSPLFASE 166

[Close]
BLAST of CsaV3_7G002400 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 44/150 (29.33%), Postives = 67/150 (44.67%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VR +++                       
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNXXXXXXXXXXXXXXXXXXXXXKR 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKV-----PSSERREHDCSVCLTQFEPESAINHL 120
                            R R     F+ +       +ER   DC VCL  F+ E  ++ L
Sbjct: 61  -----------------RRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSEL 120

Query: 121 -SCGHLFHTDCLEKWLDYWNITCPLCRTPL 145
            SC H FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 VSCKHYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]
BLAST of CsaV3_7G002400 vs. TAIR10
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0 

Query: 82  PRIRFDKV--PSSERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKW-LDYWNITC 141
           P IRF ++  P        C+VCL +FE +  I  L +C H+FH  CL++W + Y  +TC
Sbjct: 86  PVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMTC 145

Query: 142 PLCRTPLMSEEGKSCF 154
           PLCRTP +S+E +  F
Sbjct: 146 PLCRTPFISDELQVAF 161

[Close]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match: sp|Q9SI09|XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-35
Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPS----TVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS PS             
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSXXXXXXXXXXXXX 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
              SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  XXXSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match: sp|Q9LY41|ATL4_ARATH (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 82  PRIRFDKVP--SSERREHDCSVCLTQFEPESAINHLS-CGHLFHTDCLEKWLDYWNITCP 141
           P  +F  V   SS     DC+VCL++FEPE  +  L  C H FH DC++ WL   N TCP
Sbjct: 98  PIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWL-VSNQTCP 157

Query: 142 LCRTPLMSEE 149
           LCR+PL + E
Sbjct: 158 LCRSPLFASE 166

[Close]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match: sp|Q9ZT50|RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.1e-10
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match: sp|Q9ZU51|RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0 

Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match: sp|Q9SZL4|ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 99  CSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYWNITCPLCRT 143
           C +CL +FE E A+ HL  C HLFH +C+E WL   ++TCPLCR+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match: tr|A0A0A0K534|A0A0A0K534_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 4.9e-81
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match: tr|A0A1S3CFW8|A0A1S3CFW8_CUCME (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500499 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.5e-77
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match: tr|A0A1S4E4A9|A0A1S4E4A9_CUCME (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.6e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match: tr|A0A1S3CGH9|A0A1S3CGH9_CUCME (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.6e-77
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match: tr|A0A1S3CHG1|A0A1S3CHG1_CUCME (probable E3 ubiquitin-protein ligase XERICO isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.4e-75
Identity = 139/153 (90.85%), Postives = 144/153 (94.12%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144555.27.4e-8194.81PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativ... [more]
XP_011658651.11.8e-7994.77PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativ... [more]
XP_008462033.12.2e-7792.16PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo][more]
XP_008462031.18.5e-7790.91PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo][more]
XP_016902815.18.5e-7790.91PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo][more]
BLAST of CsaV3_7G002400 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04240.12.3e-3654.67RING/U-box superfamily protein[more]
AT3G61460.12.1e-1342.67brassinosteroid-responsive RING-H2[more]
AT3G60220.18.9e-1247.14TOXICOS EN LEVADURA 4[more]
AT1G67856.11.2e-1129.33RING/U-box superfamily protein[more]
AT5G41400.11.2e-1142.11RING/U-box superfamily protein[more]
BLAST of CsaV3_7G002400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SI09|XERIC_ARATH4.2e-3554.67Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X... [more]
sp|Q9LY41|ATL4_ARATH1.6e-1047.14E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV... [more]
sp|Q9ZT50|RHA2A_ARATH6.1e-1047.06E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ... [more]
sp|Q9ZU51|RHA2B_ARATH1.4e-0944.44E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ... [more]
sp|Q9SZL4|ATL18_ARATH3.9e-0953.33RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1[more]
BLAST of CsaV3_7G002400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K534|A0A0A0K534_CUCSA4.9e-8194.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1[more]
tr|A0A1S3CFW8|A0A1S3CFW8_CUCME1.5e-7792.16probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500... [more]
tr|A0A1S4E4A9|A0A1S4E4A9_CUCME5.6e-7790.91probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G... [more]
tr|A0A1S3CGH9|A0A1S3CGH9_CUCME5.6e-7790.91probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G... [more]
tr|A0A1S3CHG1|A0A1S3CHG1_CUCME1.4e-7590.85probable E3 ubiquitin-protein ligase XERICO isoform X2 OS=Cucumis melo OX=3656 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002400.1CsaV3_7G002400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 99..140
e-value: 1.0E-5
score: 35.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 98..141
e-value: 5.2E-11
score: 42.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 99..141
score: 12.961
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 64..146
e-value: 1.1E-16
score: 62.3
NoneNo IPR availablePANTHERPTHR14155:SF204E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..145
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 93..146

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G002400Cucumber (Chinese Long) v3cuccucB214
CsaV3_7G002400Silver-seed gourdcarcucB0232
CsaV3_7G002400Silver-seed gourdcarcucB0386
CsaV3_7G002400Silver-seed gourdcarcucB1113
CsaV3_7G002400Silver-seed gourdcarcucB1114
CsaV3_7G002400Cucumber (Gy14) v2cgybcucB306
CsaV3_7G002400Cucumber (Gy14) v2cgybcucB348
CsaV3_7G002400Cucumber (Gy14) v1cgycucB116
CsaV3_7G002400Cucumber (Gy14) v1cgycucB160
CsaV3_7G002400Cucurbita maxima (Rimu)cmacucB0173
CsaV3_7G002400Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002400Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G002400Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G002400Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G002400Cucurbita moschata (Rifu)cmocucB0162
CsaV3_7G002400Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G002400Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G002400Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G002400Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G002400Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G002400Cucurbita pepo (Zucchini)cpecucB0870
CsaV3_7G002400Wild cucumber (PI 183967)cpicucB375
CsaV3_7G002400Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002400Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G002400Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G002400Melon (DHL92) v3.5.1cucmeB534
CsaV3_7G002400Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G002400Melon (DHL92) v3.6.1cucmedB521
CsaV3_7G002400Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G002400Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G002400Watermelon (97103) v1cucwmB634
CsaV3_7G002400Watermelon (97103) v2cucwmbB549
CsaV3_7G002400Wax gourdcucwgoB695
CsaV3_7G002400Wax gourdcucwgoB703