CsaV3_7G002040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 1645370 .. 1646127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATTTTGGCAAACCTATGTAAGTCAATGATACATACTTTTATGAATTTAAGAGCATTTGCCTTCTGTTTAAGTTTTATCATTACGTTTGTTTGACATCTTGCAGAAATAGGTAGTCATTCTCATTGGAATAAAATATATTTTTTAGAACATTCCTTTGCGCTCCAATTTGATTTTCGCGTTGTATGAATGCCATGTGCCGGGATTTTGTTTTTAAAATTGTTAGAATCATTTTTGTCATGTTTGAAAATCATCCTCAAACACGATTTTAATCTTTCAAAATTAATTTGTATGGTATAAAACTTATAAAACTAAACGTTAAATTGAATTTGAGTGTTTCAAGACATCCCAAGATTAAAAAAACTTGTGCTCTTTGAACGTATAGACCATGCTAATGCAATGGCTTTCTGGCGCAGCAAGACTGAGAGTACAATGGTTGGAGAAGAAAAGGTTGAACATCCTCTAGAAGAATTATTTCTTCTCTACCCTGAACTTAATCCAGATCTGGGTTTGCTCCAGATACACGGTTTCATTACTGAAACGGTGAGGTTAAGATATAACTTGAATGAACAATAATTAGGCTGAGGACATTTTAGTATCTTTTAACTGCAACTTCAACACTCTTTTTCTGCAGAACTTTCACTGGCCTTGGCATTTGATAGTTCTTTTTTTGAAAGTAGTAACACTTCCAATCGGTTTGGAATTCAATCTCCGACTGTCGATTTCCAACTTGGATGCAAGTTCTTGTGGTTGA

mRNA sequence

ATGAGGCATTTTGGCAAACCTATCAAGACTGAGAGTACAATGGTTGGAGAAGAAAAGGTTGAACATCCTCTAGAAGAATTATTTCTTCTCTACCCTGAACTTAATCCAGATCTGGGTTTGCTCCAGATACACGGTTTCATTACTGAAACGAACTTTCACTGGCCTTGGCATTTGATAGTTCTTTTTTTGAAAGTAGTAACACTTCCAATCGGTTTGGAATTCAATCTCCGACTGTCGATTTCCAACTTGGATGCAAGTTCTTGTGGTTGA

Coding sequence (CDS)

ATGAGGCATTTTGGCAAACCTATCAAGACTGAGAGTACAATGGTTGGAGAAGAAAAGGTTGAACATCCTCTAGAAGAATTATTTCTTCTCTACCCTGAACTTAATCCAGATCTGGGTTTGCTCCAGATACACGGTTTCATTACTGAAACGAACTTTCACTGGCCTTGGCATTTGATAGTTCTTTTTTTGAAAGTAGTAACACTTCCAATCGGTTTGGAATTCAATCTCCGACTGTCGATTTCCAACTTGGATGCAAGTTCTTGTGGTTGA

Protein sequence

MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIVLFLKVVTLPIGLEFNLRLSISNLDASSCG
Homology
[Close]
BLAST of CsaV3_7G002040 vs. NCBI nr
Match: KGN43360.1 (hypothetical protein Csa_7G027270 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.9e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV 60
          MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV
Sbjct: 1  MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV 60

Query: 61 LFLKVVTLPIGLEFNLRLSISNLDASSCG 90
          LFLKVVTLPIGLEFNLRLSISNLDASSCG
Sbjct: 61 LFLKVVTLPIGLEFNLRLSISNLDASSCG 89

[Close]
BLAST of CsaV3_7G002040 vs. TrEMBL
Match: tr|A0A0A0K0Y6|A0A0A0K0Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027270 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV 60
          MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV
Sbjct: 1  MRHFGKPIKTESTMVGEEKVEHPLEELFLLYPELNPDLGLLQIHGFITETNFHWPWHLIV 60

Query: 61 LFLKVVTLPIGLEFNLRLSISNLDASSCG 90
          LFLKVVTLPIGLEFNLRLSISNLDASSCG
Sbjct: 61 LFLKVVTLPIGLEFNLRLSISNLDASSCG 89

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43360.11.9e-44100.00hypothetical protein Csa_7G027270 [Cucumis sativus][more]
BLAST of CsaV3_7G002040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K0Y6|A0A0A0K0Y6_CUCSA1.2e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002040.1CsaV3_7G002040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G002040CsGy7G001910Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G002040Cucumber (Chinese Long) v3cuccucB187
CsaV3_7G002040Cucumber (Chinese Long) v3cuccucB214
CsaV3_7G002040Silver-seed gourdcarcucB0232
CsaV3_7G002040Silver-seed gourdcarcucB0386
CsaV3_7G002040Silver-seed gourdcarcucB1114
CsaV3_7G002040Cucumber (Gy14) v2cgybcucB196
CsaV3_7G002040Cucumber (Gy14) v2cgybcucB306
CsaV3_7G002040Cucumber (Gy14) v1cgycucB116
CsaV3_7G002040Cucumber (Gy14) v1cgycucB160
CsaV3_7G002040Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002040Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G002040Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G002040Cucurbita maxima (Rimu)cmacucB0766
CsaV3_7G002040Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G002040Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G002040Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G002040Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G002040Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G002040Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G002040Wild cucumber (PI 183967)cpicucB375
CsaV3_7G002040Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002040Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G002040Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G002040Melon (DHL92) v3.5.1cucmeB534
CsaV3_7G002040Melon (DHL92) v3.5.1cucmeB555
CsaV3_7G002040Melon (DHL92) v3.6.1cucmedB521
CsaV3_7G002040Melon (DHL92) v3.6.1cucmedB543
CsaV3_7G002040Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G002040Watermelon (97103) v1cucwmB634
CsaV3_7G002040Watermelon (97103) v2cucwmbB549
CsaV3_7G002040Wax gourdcucwgoB695