CsaV3_7G001110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G001110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontrafficking protein particle complex subunit 2-like protein
Locationchr7 : 988881 .. 991598 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAATTGAAAATCACCGTTTGATAGGAAATATTAATAACTATACATAAATTATATAAATTTGGTGAGTTTTAGAAACGTATGTCATATAGATATCTTATGATATATTGTTTGAAGAATAATAAATAAAAAGATAAAAAGAATAATAATAATCCATCGGTTTTTTGTTGTGATTTAGAAGATCGGACCTTCTTCGTGGTATCGCAACCGAGAAATTAGCATCTCCCGAGTTTTTTCGCAATCCTGCCAGAAAGAATTTCGGCGGCCACTGTCGAAGATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGGTGCGACCCCATGAATACCATATTTTATGGAACCCAAAATAATTTCATATATGTTTATAAGAAAAGATTTTGTGATCCCTTTTTCCGATTCGGGCCGAGCTAACAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCCCTGGATGTCGTCGATGAGCGAGGTATATTTATCTCTCTTGTAATTTGATATTTCGCGATCAGATCTACGAATCTCGCTTGCTGTTGTACTCAACTAGTAGGGTTTTCGAATTGCTTTGATTTATGTGTCTTGTAGACTCCAATTTGTTTTTCTTATATTGTTTGTGGTGTTGTTGCCAGTGAACAATCCGAGAAAATCTGGACCGACCCTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTGAGTATGATTGTTCATATAAGTAGGATCAGAATTGGTCCTGTTTTCTATTTCAATTGGAGTAGACCTTTAACGCTCTGTACATTTCCAGGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTGTGAGTTTCGTTTGTGGGTTTTTTGCAATTTTCTACAGCAGTATAGTTCTTTAATTTCCATTTCACTTGTGACTATTACTGTCAAGTAAGTTTTGAAAAGCTTCAAACTTGTTTATTTGTGAAAACTTTAGTGATGCAAACACTTGATAAGTGCCTCCTACTATTCAATTGTCTTTTAGAAGCTTGCTTTCAATGTTAAAGGGCAAGCTTTCCCGTGGTTGCTATTTAGTATTGATGTGAGCATGATATATTCCTAGAGAGGAAATTGACATATATTACCTTCCTTGACGGCGAGCTGAAACCAGAAGTGGCATCTGCCGGTATCTGAAATGAGCTTCTTATGCTCCGAATATGCACACTTTAATCTCTAAATACATATAGTAGTAGAGGATATGTGAGTGCTAGCATGCTCAATACCCAACGATAATTGAGATGTAATTCTTTCCTTGAGGTCTAGGGCTCTAAACCTGTAGTAGAGGATATGTGAATACAAATACCATTTTAGCTGGTAAGGAAGATAGATTTGAACATGACATATTCTAGAGACTTGAGAGGTACACTATTACAGTATTTATTTTCACCTCACATGCTGCAGAAACAGGAAATGACGTCCACTCAAATTTGAAGTTGGTTTCTTATCTGAAAATATTTGCGTTCAATTTTTCTTGAACGAAACCTTACAATAGGATGTTTTAATAATGTGCAATATATGATTCATTGTCGTTATTATTTTTAAGCATTGTTTTCTTTTAACGTTTGTACTTATAACTCGACAGATCAACGGTTTTATTCTTTATAACTCTTGCTTCTTTAGGGAGTTGTGGTTTGTCATTGGTTTGAGAAGTCTGAGTTTCGTTAGTTTATAAGGATGTTTAGTTATTTGTAGCCTTTATTTGGATTGTGAGGAGGATTGAATTGTAAGAAGTTCTCTTTTGTACAGTTTCTGTTTCAATTACAAGCGTATAATTTTAAAAAATCTGGTGTACTGCATGTTTATAGTTCAGCTATGCAAGATTCCATTAAACAAGATCTATTCTATAGGTTGTGTAGCTATGTCCTAAGTGATACTATTTTGTTGTCTTAATTGATGCCTCTCTCGCATACACTATACTTTTCTGATAAAGAAAGTTAAACTTAGCCAATTTTTTAACATGACATCTGACCCTAGTTCAAATTTGCATCCAGTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCGTTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGAGTGACGAACCACGCAACCATTGTGTAGAACTGAAACTTCAATACCGAGTCGAAGCCATTGACGACAGCAGTTTATAAACCTTTGTTGATTACTGTCATCTTTCTTGTATTCTTGATGGTATTTGATTTTTATTTTATCCGTTGTGGTAAGAAAGGTGATACAACTGAACTTTTTTTCATAGACATTGACTGTTTCTATTTTGAGCTCTTTCTCACATATTGGATTCTGCTTCGAGCTGAAATTTTATCTATGAGGATATTAACTTTAGAGTTGGTTAGCC

mRNA sequence

ATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCCCTGGATGTCGTCGATGAGCGAGTGAACAATCCGAGAAAATCTGGACCGACCCTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCGTTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGA

Coding sequence (CDS)

ATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCCCTGGATGTCGTCGATGAGCGAGTGAACAATCCGAGAAAATCTGGACCGACCCTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCGTTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGA

Protein sequence

MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Homology
[Close]
BLAST of CsaV3_7G001110 vs. NCBI nr
Match: XP_004144858.1 (PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >XP_008447943.1 PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis melo] >KGN43262.1 hypothetical protein Csa_7G014480 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of CsaV3_7G001110 vs. NCBI nr
Match: XP_022928280.1 (trafficking protein particle complex subunit 2-like protein [Cucurbita moschata] >XP_022989273.1 trafficking protein particle complex subunit 2-like protein [Cucurbita maxima] >XP_023529813.1 trafficking protein particle complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 4.3e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of CsaV3_7G001110 vs. NCBI nr
Match: XP_022136317.1 (trafficking protein particle complex subunit 2-like protein [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 2.8e-74
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]
BLAST of CsaV3_7G001110 vs. NCBI nr
Match: XP_023872854.1 (trafficking protein particle complex subunit 2-like protein [Quercus suber])

HSP 1 Score: 282.0 bits (720), Expect = 1.2e-72
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 143
           ITSKTFAE VSTIVKSFG SSA
Sbjct: 121 ITSKTFAERVSTIVKSFGLSSA 142

[Close]
BLAST of CsaV3_7G001110 vs. NCBI nr
Match: XP_010107644.1 (trafficking protein particle complex subunit 2-like protein [Morus notabilis] >EXC16555.1 Trafficking protein particle complex subunit 2-like protein [Morus notabilis])

HSP 1 Score: 281.6 bits (719), Expect = 1.5e-72
Identity = 136/142 (95.77%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 143
           ITSKTFAE+VSTIVKSFG SSA
Sbjct: 121 ITSKTFAETVSTIVKSFGLSSA 142

[Close]
BLAST of CsaV3_7G001110 vs. TAIR10
Match: AT2G20930.1 (SNARE-like superfamily protein)

HSP 1 Score: 258.1 bits (658), Expect = 3.3e-69
Identity = 122/140 (87.14%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVRSFFR+FHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFS 141
           ITS+TFA++VS IV S+G +
Sbjct: 121 ITSRTFAQTVSNIVGSYGLN 140

[Close]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match: sp|Q54CU7|TPC2L_DICDI (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum OX=44689 GN=trappc2l PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-34
Identity = 68/139 (48.92%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 2   IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETF 61
           IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKK---LPSDMY 63

Query: 62  LGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRSFFRRFHAAYVDAVSNPFHVP 121
           LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +++  SNPF+ P
Sbjct: 64  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 123

Query: 122 GKKITSKTFAESVSTIVKS 137
             K+ SK F + V+ +V S
Sbjct: 124 NSKVESKKFLQEVTNLVPS 139

[Close]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match: sp|Q5M8X5|TPC2L_XENTR (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=trappc2l PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-32
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
             I S+ F  +V++++
Sbjct: 121 DPIQSRAFDNTVTSMM 135

[Close]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match: sp|B2RYU6|TPC2L_RAT (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus OX=10116 GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.9e-32
Identity = 66/136 (48.53%), Postives = 99/136 (72.79%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match: sp|Q9JME7|TPC2L_MOUSE (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 66/136 (48.53%), Postives = 98/136 (72.06%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match: sp|A6H7F7|TPC2L_BOVIN (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31
Identity = 66/136 (48.53%), Postives = 98/136 (72.06%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSI-PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDGMVTSMM 135

[Close]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match: tr|A0A1S3BJH9|A0A1S3BJH9_CUCME (trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3656 GN=LOC103490277 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match: tr|A0A0A0K4Q0|A0A0A0K4Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match: tr|W9RXA9|W9RXA9_9ROSA (Trafficking protein particle complex subunit 2-like protein OS=Morus notabilis OX=981085 GN=L484_008360 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.0e-72
Identity = 136/142 (95.77%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 143
           ITSKTFAE+VSTIVKSFG SSA
Sbjct: 121 ITSKTFAETVSTIVKSFGLSSA 142

[Close]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match: tr|A0A2N9EZ78|A0A2N9EZ78_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7811 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.9e-72
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 143
           ITS+TFAE VSTIVKSFG S+A
Sbjct: 121 ITSRTFAERVSTIVKSFGLSTA 142

[Close]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match: tr|V4U967|V4U967_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029529mg PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.6e-72
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 143
           ITS+TFAE VSTIVKSFG SSA
Sbjct: 121 ITSRTFAERVSTIVKSFGLSSA 142

The following BLAST results are available for this feature:
BLAST of CsaV3_7G001110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144858.11.9e-75100.00PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis ... [more]
XP_022928280.14.3e-7599.30trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]... [more]
XP_022136317.12.8e-7497.20trafficking protein particle complex subunit 2-like protein [Momordica charantia... [more]
XP_023872854.11.2e-7296.48trafficking protein particle complex subunit 2-like protein [Quercus suber][more]
XP_010107644.11.5e-7295.77trafficking protein particle complex subunit 2-like protein [Morus notabilis] >E... [more]
BLAST of CsaV3_7G001110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20930.13.3e-6987.14SNARE-like superfamily protein[more]
BLAST of CsaV3_7G001110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q54CU7|TPC2L_DICDI3.3e-3448.92Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium dis... [more]
sp|Q5M8X5|TPC2L_XENTR5.2e-3249.26Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicali... [more]
sp|B2RYU6|TPC2L_RAT8.9e-3248.53Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus... [more]
sp|Q9JME7|TPC2L_MOUSE1.2e-3148.53Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=1... [more]
sp|A6H7F7|TPC2L_BOVIN3.4e-3148.53Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=991... [more]
BLAST of CsaV3_7G001110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BJH9|A0A1S3BJH9_CUCME1.3e-75100.00trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3... [more]
tr|A0A0A0K4Q0|A0A0A0K4Q0_CUCSA1.3e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1[more]
tr|W9RXA9|W9RXA9_9ROSA1.0e-7295.77Trafficking protein particle complex subunit 2-like protein OS=Morus notabilis O... [more]
tr|A0A2N9EZ78|A0A2N9EZ78_FAGSY3.9e-7295.07Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7811 PE=4 SV=1[more]
tr|V4U967|V4U967_9ROSI6.6e-7294.37Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029529mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR006722Sedlin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0030008 TRAPP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G001110.1CsaV3_7G001110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 1..140
e-value: 2.2E-43
score: 149.1
NoneNo IPR availablePANTHERPTHR12403:SF11TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2-LIKE PROTEINcoord: 2..136
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 7..135
e-value: 4.1E-34
score: 117.4
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403MBP-1 INTERACTING PROTEIN-2Acoord: 2..136
IPR011012Longin-like domain superfamilySUPERFAMILYSSF64356SNARE-likecoord: 2..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G001110CSPI07G01070Wild cucumber (PI 183967)cpicucB415
CsaV3_7G001110Cucsa.370440Cucumber (Gy14) v1cgycucB562
CsaV3_7G001110CmaCh11G013690Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G001110CmoCh11G017490Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G001110Cp4.1LG04g04830Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G001110CsGy7G000890Cucumber (Gy14) v2cgybcucB348
CsaV3_7G001110Carg05715Silver-seed gourdcarcucB1069
CsaV3_7G001110Cla015817Watermelon (97103) v1cucwmB634
CsaV3_7G001110MELO3C013345Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G001110ClCG02G003990Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G001110Lsi11G012110Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G001110MELO3C013345.2Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G001110Cla97C02G030830Watermelon (97103) v2cucwmbB549
CsaV3_7G001110Bhi05G001464Wax gourdcucwgoB695
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G001110Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G001110Silver-seed gourdcarcucB0347
CsaV3_7G001110Silver-seed gourdcarcucB0386
CsaV3_7G001110Silver-seed gourdcarcucB0851
CsaV3_7G001110Cucumber (Gy14) v2cgybcucB093
CsaV3_7G001110Cucumber (Gy14) v1cgycucB352
CsaV3_7G001110Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G001110Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G001110Cucurbita maxima (Rimu)cmacucB0766
CsaV3_7G001110Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G001110Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G001110Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G001110Cucurbita moschata (Rifu)cmocucB0753
CsaV3_7G001110Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G001110Cucurbita pepo (Zucchini)cpecucB0368
CsaV3_7G001110Cucurbita pepo (Zucchini)cpecucB0952
CsaV3_7G001110Wild cucumber (PI 183967)cpicucB117
CsaV3_7G001110Bottle gourd (USVL1VR-Ls)cuclsiB523
CsaV3_7G001110Melon (DHL92) v3.5.1cucmeB533
CsaV3_7G001110Melon (DHL92) v3.6.1cucmedB520
CsaV3_7G001110Watermelon (Charleston Gray)cucwcgB565
CsaV3_7G001110Watermelon (97103) v1cucwmB628
CsaV3_7G001110Watermelon (97103) v2cucwmbB543
CsaV3_7G001110Wax gourdcucwgoB706