CsaV3_7G001100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G001100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 987050 .. 987813 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGGCATGTTCCAATGCTGTCTCTAATTATCCTCTGCTTCTATCAATAAATACAGGTGATTTCAATCATAGCATTGTCATCATGCAAAACCTGATGGAGACTAAAACCTCTTGTAGGTAGCAAAAACTGGGACTACTGTGTTATTTCGAAATTGAGCCAAGACCAAAGGTTGAGATACTACTTTGATTCTTTTTCTGTCATTCCTAAACTTGGTTTTTAATTTTGTTTCAGCCTTTCAGATCCATCTTATTTCTCTCACTCACTCTGAAGCTCTCTTTTCTGTTTCAGATGTATTGAATGGATGGGTTGTTGTTGTGTTGGGACTGAGAATAATAAAAAAGGTGGAGAAGAACTTGTGCTTTCTGTTTCTCAAGTCATTCCATGTAGGGATACCATATGTGCACACCCAAGAGCTAGTTCTTGTGATCAACTGCCCTTTCAGTGCCTCTAAATTCTGGGTATTTCGTTGATTTTTATCATCTCATGCCCCCTTCCACTTCCTCTCCCCTCTTCTCTGTCTCGGATGTTCTTTGTTGAACAGGGTTTATATGCAGACATTGCTATCAAATGAACCCAAATGGCTACTCTTTTCCAATGATGATGTGGGTAGCATTTGTAGAGAAAATTACCATACTACTACAGGTTGCAACAACAGCTACGTTTTTTTTTCATCCTCTTTGTTGGAAACAATGGGGACCAGAGTATTAGTTCCATTTCCGTTTGGAATAGTGGTGTTGTTCATTGCTCAACATGTATAG

mRNA sequence

ATGTTTTTGGCATGTTCCAATGCTGTCTCTAATTATCCTCTGCTTCTATCAATAAATACAGGTGATTTCAATCATAGCATTGTCATCATGCAAAACCTGATGGAGACTAAAACCTCTTCCTTTCAGATCCATCTTATTTCTCTCACTCACTCTGAAGCTCTCTTTTCTGTTTCAGATGTATTGAATGGATGGGTTGTTGTTGTGTTGGGACTGAGAATAATAAAAAAGGTGGAGAAGAACTTGTGCTTTCTGTTTCTCAAGTCATTCCATGTAGGGATACCATATGTGCACACCCAAGAGCTAGTTCTTGTGATCAACTGCCCTTTCAGTGCCTCTAAATTCTGGACATTGCTATCAAATGAACCCAAATGGCTACTCTTTTCCAATGATGATGTGGGTAGCATTTGTAGAGAAAATTACCATACTACTACAGGTTGCAACAACAGCTACGTTTTTTTTTCATCCTCTTTGTTGGAAACAATGGGGACCAGAGTATTAGTTCCATTTCCGTTTGGAATAGTGGTGTTGTTCATTGCTCAACATGTATAG

Coding sequence (CDS)

ATGTTTTTGGCATGTTCCAATGCTGTCTCTAATTATCCTCTGCTTCTATCAATAAATACAGGTGATTTCAATCATAGCATTGTCATCATGCAAAACCTGATGGAGACTAAAACCTCTTCCTTTCAGATCCATCTTATTTCTCTCACTCACTCTGAAGCTCTCTTTTCTGTTTCAGATGTATTGAATGGATGGGTTGTTGTTGTGTTGGGACTGAGAATAATAAAAAAGGTGGAGAAGAACTTGTGCTTTCTGTTTCTCAAGTCATTCCATGTAGGGATACCATATGTGCACACCCAAGAGCTAGTTCTTGTGATCAACTGCCCTTTCAGTGCCTCTAAATTCTGGACATTGCTATCAAATGAACCCAAATGGCTACTCTTTTCCAATGATGATGTGGGTAGCATTTGTAGAGAAAATTACCATACTACTACAGGTTGCAACAACAGCTACGTTTTTTTTTCATCCTCTTTGTTGGAAACAATGGGGACCAGAGTATTAGTTCCATTTCCGTTTGGAATAGTGGTGTTGTTCATTGCTCAACATGTATAG

Protein sequence

MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDVLNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSNEPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQHV
Homology
[Close]
BLAST of CsaV3_7G001100 vs. NCBI nr
Match: KGN43261.1 (hypothetical protein Csa_7G014470 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 1.3e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV 60
           MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV
Sbjct: 1   MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV 60

Query: 61  LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN 120
           LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN
Sbjct: 61  LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN 120

Query: 121 EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ 180
           EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ
Sbjct: 121 EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ 180

Query: 181 HV 183
           HV
Sbjct: 181 HV 182

[Close]
BLAST of CsaV3_7G001100 vs. NCBI nr
Match: XP_022989140.1 (transcription factor ABORTED MICROSPORES-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 7.5e-08
Identity = 63/191 (32.98%), Postives = 83/191 (43.46%), Query Frame = 0 

Query: 15  LLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDVLNGWVVVVLGLRII 74
           LLS+N GD NHSIVIMQ LME         L  L  S++          W   VL     
Sbjct: 9   LLSMNAGDINHSIVIMQTLME--------RLRPLVGSKS----------WDYCVLW---- 68

Query: 75  KKVEKNLCFLFLKSFHVGI---------------------PYVHTQELVLVINC--PFSA 134
           K  +   C  ++     G                      P   + +L+  + C  P ++
Sbjct: 69  KLSQDQRCIEWVDCCCAGTENNQNGGEEHVFPCRDTLSPHPRASSCDLLAQLPCSVPLNS 128

Query: 135 SKF-WTLLSNEPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFP 182
             +  TLLSNEP+WLLFSN                        S++L ETMGTRVL+PFP
Sbjct: 129 GVYIQTLLSNEPRWLLFSNGT---------------------DSTALEETMGTRVLIPFP 156

[Close]
BLAST of CsaV3_7G001100 vs. NCBI nr
Match: XP_022989135.1 (transcription factor ABORTED MICROSPORES-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 64/197 (32.49%), Postives = 86/197 (43.65%), Query Frame = 0 

Query: 15  LLSINTGDFNHSIVIMQNLME-------TKTSSFQIHLISLTHSEALFSVSDVL------ 74
           LLS+N GD NHSIVIMQ LME       +K+  + + L  L+  +      D        
Sbjct: 9   LLSMNAGDINHSIVIMQTLMERLRPLVGSKSWDYCV-LWKLSQDQRCIEWVDCCCAGTEN 68

Query: 75  --NGWVVVVLGLR--IIKKVEKNLCFLFLKSFHVGIP-----YVHTQELVLVINCPFSAS 134
             NG    V   R  +      + C L L      +P     +++        + P  + 
Sbjct: 69  NQNGGEEHVFPCRDTLSPHPRASSCDL-LAQLPCSVPLNSGYFIYIYHSTYPTSLPHLSL 128

Query: 135 KF--------WTLLSNEPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTR 182
            F         TLLSNEP+WLLFSN                        S++L ETMGTR
Sbjct: 129 NFSLLNRVYIQTLLSNEPRWLLFSNGT---------------------DSTALEETMGTR 182

[Close]
BLAST of CsaV3_7G001100 vs. NCBI nr
Match: XP_022928264.1 (transcription factor ABORTED MICROSPORES-like isoform X3 [Cucurbita moschata] >XP_022928265.1 transcription factor ABORTED MICROSPORES-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 116 TLLSNEPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVV 175
           TLLSNEP+WLLFSN                        S++L ETMGTRVL+PFPFG+V 
Sbjct: 115 TLLSNEPRWLLFSNG---------------------MDSTALEETMGTRVLIPFPFGLVE 159

Query: 176 LFIAQH 182
           LFIA+H
Sbjct: 175 LFIAKH 159

[Close]
BLAST of CsaV3_7G001100 vs. NCBI nr
Match: XP_022928262.1 (transcription factor ABORTED MICROSPORES-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 116 TLLSNEPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVV 175
           TLLSNEP+WLLFSN                        S++L ETMGTRVL+PFPFG+V 
Sbjct: 147 TLLSNEPRWLLFSNG---------------------MDSTALEETMGTRVLIPFPFGLVE 191

Query: 176 LFIAQH 182
           LFIA+H
Sbjct: 207 LFIAKH 191

[Close]
BLAST of CsaV3_7G001100 vs. TrEMBL
Match: tr|A0A0A0K5Z7|A0A0A0K5Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014470 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 8.9e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV 60
           MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV
Sbjct: 1   MFLACSNAVSNYPLLLSINTGDFNHSIVIMQNLMETKTSSFQIHLISLTHSEALFSVSDV 60

Query: 61  LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN 120
           LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN
Sbjct: 61  LNGWVVVVLGLRIIKKVEKNLCFLFLKSFHVGIPYVHTQELVLVINCPFSASKFWTLLSN 120

Query: 121 EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ 180
           EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ
Sbjct: 121 EPKWLLFSNDDVGSICRENYHTTTGCNNSYVFFSSSLLETMGTRVLVPFPFGIVVLFIAQ 180

Query: 181 HV 183
           HV
Sbjct: 181 HV 182

The following BLAST results are available for this feature:
BLAST of CsaV3_7G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43261.11.3e-97100.00hypothetical protein Csa_7G014470 [Cucumis sativus][more]
XP_022989140.17.5e-0832.98transcription factor ABORTED MICROSPORES-like isoform X3 [Cucurbita maxima][more]
XP_022989135.14.9e-0732.49transcription factor ABORTED MICROSPORES-like isoform X1 [Cucurbita maxima][more]
XP_022928264.13.2e-0651.52transcription factor ABORTED MICROSPORES-like isoform X3 [Cucurbita moschata] >X... [more]
XP_022928262.13.2e-0651.52transcription factor ABORTED MICROSPORES-like isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_7G001100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5Z7|A0A0A0K5Z7_CUCSA8.9e-98100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G001100.1CsaV3_7G001100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G001100CsGy7G000880Cucumber (Gy14) v2cgybcucB348
CsaV3_7G001100Carg19345Silver-seed gourdcarcucB0347
CsaV3_7G001100Carg05714Silver-seed gourdcarcucB1069
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G001100Watermelon (97103) v2cucwmbB543
CsaV3_7G001100Watermelon (97103) v2cucwmbB549
CsaV3_7G001100Wax gourdcucwgoB695
CsaV3_7G001100Wax gourdcucwgoB706
CsaV3_7G001100Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G001100Silver-seed gourdcarcucB0386
CsaV3_7G001100Silver-seed gourdcarcucB0851
CsaV3_7G001100Cucumber (Gy14) v2cgybcucB093
CsaV3_7G001100Cucumber (Gy14) v1cgycucB352
CsaV3_7G001100Cucumber (Gy14) v1cgycucB562
CsaV3_7G001100Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G001100Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G001100Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G001100Cucurbita maxima (Rimu)cmacucB0766
CsaV3_7G001100Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G001100Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G001100Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G001100Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G001100Cucurbita moschata (Rifu)cmocucB0753
CsaV3_7G001100Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G001100Cucurbita pepo (Zucchini)cpecucB0368
CsaV3_7G001100Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G001100Cucurbita pepo (Zucchini)cpecucB0952
CsaV3_7G001100Wild cucumber (PI 183967)cpicucB117
CsaV3_7G001100Wild cucumber (PI 183967)cpicucB415
CsaV3_7G001100Bottle gourd (USVL1VR-Ls)cuclsiB523
CsaV3_7G001100Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G001100Melon (DHL92) v3.5.1cucmeB533
CsaV3_7G001100Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G001100Melon (DHL92) v3.6.1cucmedB520
CsaV3_7G001100Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G001100Watermelon (Charleston Gray)cucwcgB565
CsaV3_7G001100Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G001100Watermelon (97103) v1cucwmB628
CsaV3_7G001100Watermelon (97103) v1cucwmB634