CsaV3_7G000610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr7 : 664601 .. 668772 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCGAAAAGCTTTTGTTTAGATGATGTTGCAAATATTGACCTTTGTGCAGTCATTTCAGAATGCAACATGGTGGACAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCCGTTTCTAGTGGAGCACAACTATTTATGGGTAACTCCTCTACTTCAAAGGTTGAGGGACAAGACAAAGTGATTCTTAAAATGACCTCTAGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGACTTTAAGTTGGTCTTTGTATCTGATAAGTTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGGATTATTTGAGTGATGGTCTATTTAAATCAAATGTATTCATAGTTGTACCGAAAAGTATTATTAATAAATTATCTAATTTTGCTTATATTGTTGAGTCATTTCTTTGGCATGGTAGACTAGAACATGTTAATTTTAATTCTTTGCGAAGGCTAATTAATATGAACTTGGTTCCAAAATTTACTTTTCACACAAATCATCGATGTGAAGTGTGTGTGGAATAAAAAATGACTAAAGCACCTTTTCATTCAACTAAGAGAATTACCAAACCTTTAGAGTTAATTCATAATGATATTTGTGACTTGAAATTTGTGCAAATTAGAGGTGGAAAAAAGTATTTTATTACTTTTATCGATGATAGCACAAGATATCGTTATGTTTATCGGCTGAAAAGCAAAGATGAAGCAATTGAAGTGTTTAAGCCTTATAAAAAAAAAAGGTTGAAAATCAACTTAGCACAAAAATGAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAACAATTTTGTTCAGAACATGACATTATTGACCAAACTACTGCTCCTTCCTCACCTCAATCCAGTGGAATTGCTGAACGAAAAAATCGAACACTTCAGAAAATGATGAACGCAATGTTTATAAGTTCAGGTTTACCCCAAAATTTGTGGAGAGAAACTTTGTTAACAGCAAATTATTTATTAAACAGAATTCTTCATAAGAAGTCACCAAATATTCCTTATGAAAAGTGGAAAGGAAGAAAACCTTCATATAAATTCTTAAAAGTATGGGGTGCCTAACAAAAGTTGTCGTGCCTAAACCGAAAATGGTTAAAATCGAACCAAAAACTGTTGATTGCATATTCATTGGTTATGTTAGTTGTGTATATCGATTTATAGTTGGAAGACGAAAATTTTCTTGTGATATAAAGGTTTTTAATATTTATTTTATTGATCAAACAAAAATGTATAACAGTGATCCGTATCACCAAACGCGAAAACTCGGAATCTTAAGTTTGATGGCATAATTTTTAGTACATTCTTAAAGATAACAATCCAACATCAATTTGTAACTTGATGGAAAGTGTTTAATATTTTTTTAGTCTCTCTGCTAACAGTTAACACTAACAACCAACAGAGTTTCTTAGCTGGAACCTTTCCCTGTGAAGTGAAATGTAATAGACAGAACTATTAAATGCAACTAAAATTTTGTTTCACCAGAAGGACAACAAGGGCTTGAGTGCCTCTGGTATGTTCATTATCCTATTAAAATTTTGGAGATTTTTTAACTCACTTTCCAGTTGTTATTTGGAGACGAAAGTAGGACATGATGTTTCTGCATAAGGTACATAGAAAGACACACTCATGTGATAAGTTATAAGCTAATGTCTCTTTAGTATTGAATCTCATCTTCCTTCCTTATCTCTATCTCTGATTAACCTAAGCCTTTCATCTATATAAAGGTTGTCATTTGGGTTCACAGCCAACAAGAGTCTTTCCATATTCCAACTCTCAAAAGCAATTTTCCAAGTTCTTTTTGGTGCATATTTATAACATGGGTTTCCGTCTACCTAGAATTGTTACTGCTAAGCCAAGTCTTCAGCGCTCTTCATCAACAGGGAATGGAGCATCTCCAAAGTCTATCGATGTTCCAAAGGGATACTTTACAGTTTATGTCGGTGAGGTAGAAAAGAAGCGTTTTGTCATCCCACTATCTTACTTGAACCAGTCATCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATACAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGACTTTTTCCTTTATTTCACCAAAAGTTTGAATGACCCATGAAGTAAAGAGATTAGTATCTAGAAATAGATAGAATATACAAGGATTAGAAAAATGCAAAATGTAGACTGTATACATTTTTTGAAATGAAAGACTTGATTCTTTGAACTGAAATTCTTTTACATCGTTCATAGTTCCTTTCGTGATTGAAACTGGATGATGAAACTACTTGAATGATTCCACTGGCTTGAAATTTTACATAAACTAGATGATACTACCTGAAGCAACGTCTAGTAATTCTACTACATAGTTATTTTCACTCACTCTTTTTCTTTATTCAAATTCTTAACCAAGTGGTGAAGAAAGATTTAAAAATTTATTTTAGTATTTTTTAAACTTCTTTATTTTATTTAAAATGGAAGTTCACTAGGGAACTCAAAATTGAATCATTGTTAACCAAGTGCAAGATCTCTAACATAGTTTACTCAAAATCTGAAAAGATCTCAGCAAGGTTGAAAAAGATGGAAGCCAAATTAAAAATTTACTAGTTTAAGTTCATTGAATTTCCACTTGAGGGATTAATTACTGAGATAATAACTCATAGATCTATCACATATATATGTGGGATCCTTGTAGGGTCTAAACAAAAGCAGCTGAAATTATACACCTACCAGTAAACACTACCAATGAGAATCATGTTATGGATGATAAGTAAGAAAACAGAATCATGTGCTAGTCATTAATGGCTGTAACTGATTACCACCATATTTCCCCAGCTTTGTCTAAAAGTGTGGGGTCCTTTTTAGGATGTTCATTTTAATAATGGCAGTGGACAATATGTATGCTATCAAATGAGTCAAAATCATTACTCAATTCACTATCAATAAATTTGAAAGCTCATCCTAACAACAAAAGATTTCTTAGCTGGAACCTTTTCTATTAGAGGAAAATATAATAGACATTGTTACTGAATACAACTACAATTTGTTTCATCAGGAGGATAACAAGATCTTGAGCATCTCTAATATGTCCATAATCTTATTAAAATTTAAACGTTTGTTTAACTTACCTCTCCAGTTGCTATCGAAAGACATAAGTTAGGCCAGGGTGTTTCTATACAAGGTGTACAAATGACCATAGATTGCATGAATTTGAAATTTTCATAATGGCTTGGAAGACACATCATGTGATAGAACATGAGATGTCTCTCTAGCATTGAATCTCATCTTCCCTTATTGTTTCTATCTTTGAGTAGTATCCTAAGCCTTTCCTCTATATAAACGCCACGTTATTTGGATTCACAAGCAACAAGAGTCTTTCCATATTCAATCTCTCCAAAGAAATTCGAAGTTTGGTATTCCTTTCCGTGTCCCATATTTGGAATCTATTACGACATGGGTTTCCGTTTGCCTAGAATTGTTACTGCAAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAACGGAGCATCTCCAAAAGCTGTTGATGTTCCTAAGGGCTACTTTGCTGTTTATATTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTATCTTACTTGAACCAGCCTTCTTTCCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCAATGAAGCCTACTTCCTCGATCTCACTCGGAGTTTGAATGACTCATGAAAGGGAAATTAGTATCTAGAAATAGATAGTATATACAAAGGATTAGAAAAGTACAAATTGTAGAATGTATACATTTTTTAAATGAAAAAATTGATTCTTTATGAAGTTTATGTCTTCTTTTGTGAAGTTTATATCTTCTTAAACCATATTCAATATCAAGAGAGGCAAGATATGGCTATTAGACAACCTCGTGTAATCCATGTCAAGAAAATTTTTCATCGAGTTCAAAATCTGCCGAGTCTTCCAACAAAGTCTCAGAAGGCTATATTCCAGTCTATCTTGGAAAGGAACTAA

mRNA sequence

ATGCAAGCGAAAAGCTTTTGTTTAGATGATGTTGCAAATATTGACCTTTGTGCAGTCATTTCAGAATGCAACATGGTGGACAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCCGTTTCTAGTGGAGCACAACTATTTATGGGTAACTCCTCTACTTCAAAGGTTGAGGGACAAGACAAAGTGATTCTTAAAATGACCTCTAGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGACTTTAAGTTGGTCTTTGTATCTGATAAGTTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGGATTATTTGAGTGATGGTCTATTTAAATCAAATGTATTCATAGTTGTACCGAAAATTTATATCTTCTTAAACCATATTCAATATCAAGAGAGGCAAGATATGGCTATTAGACAACCTCGTGTAATCCATGTCAAGAAAATTTTTCATCGAGTTCAAAATCTGCCGAGTCTTCCAACAAAGTCTCAGAAGGCTATATTCCAGTCTATCTTGGAAAGGAACTAA

Coding sequence (CDS)

ATGCAAGCGAAAAGCTTTTGTTTAGATGATGTTGCAAATATTGACCTTTGTGCAGTCATTTCAGAATGCAACATGGTGGACAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCCGTTTCTAGTGGAGCACAACTATTTATGGGTAACTCCTCTACTTCAAAGGTTGAGGGACAAGACAAAGTGATTCTTAAAATGACCTCTAGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGACTTTAAGTTGGTCTTTGTATCTGATAAGTTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGGATTATTTGAGTGATGGTCTATTTAAATCAAATGTATTCATAGTTGTACCGAAAATTTATATCTTCTTAAACCATATTCAATATCAAGAGAGGCAAGATATGGCTATTAGACAACCTCGTGTAATCCATGTCAAGAAAATTTTTCATCGAGTTCAAAATCTGCCGAGTCTTCCAACAAAGTCTCAGAAGGCTATATTCCAGTCTATCTTGGAAAGGAACTAA

Protein sequence

MQAKSFCLDDVANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYIGKDYLSDGLFKSNVFIVVPKIYIFLNHIQYQERQDMAIRQPRVIHVKKIFHRVQNLPSLPTKSQKAIFQSILERN
Homology
[Close]
BLAST of CsaV3_7G000610 vs. NCBI nr
Match: CAN82978.1 (hypothetical protein VITISV_023328 [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 108/140 (77.14%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 12  ANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKV 71
           AN++L AV+SECN+V N+KEWWVDTGATRHIC+NK MF++Y PV    +LFMG SS+SKV
Sbjct: 217 ANMNLSAVVSECNIVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKV 276

Query: 72  EGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYI 131
           EG+ KVILKMTS KELTLN+VLHVPDIRKNLVS SLLSKN FKLVFVSDKFVL+KNEM++
Sbjct: 277 EGRGKVILKMTSGKELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKNEMFV 336

Query: 132 GKDYLSDGLFKSNVFIVVPK 152
           GK YLSDGLFK NV  VVPK
Sbjct: 337 GKGYLSDGLFKMNVMTVVPK 356

[Close]
BLAST of CsaV3_7G000610 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 201.1 bits (510), Expect = 3.8e-48
Identity = 98/124 (79.03%), Postives = 110/124 (88.71%), Query Frame = 0 

Query: 28  NSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQDKVILKMTSSKEL 87
           N+KEWWVDTGATRHIC+NK MF++Y PV    +LFMGNSS+SK+EG+ KVILKMTS KEL
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 88  TLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYIGKDYLSDGLFKSNVFI 147
           TLN+VLHVPDI KNLVSGSLLSKN FKLVFVSDKFVL+KNEM++GK YLSDGLFK NV  
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMT 578

Query: 148 VVPK 152
           VVPK
Sbjct: 579 VVPK 582

[Close]
BLAST of CsaV3_7G000610 vs. NCBI nr
Match: KZV23636.1 (hypothetical protein F511_34337 [Dorcoceras hygrometricum])

HSP 1 Score: 194.9 bits (494), Expect = 2.7e-46
Identity = 90/144 (62.50%), Postives = 121/144 (84.03%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSST 69
           DV+NI+LCAV+SE N++  N KEWW+DTGATRH+C++K+MF +     +G +L+M NS+T
Sbjct: 255 DVSNINLCAVVSEVNLIGSNPKEWWIDTGATRHVCSDKEMFATLQESENGEKLYMRNSAT 314

Query: 70  SKVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNE 129
           S+++GQ  V+LKMTS KELTLNNVL+VPDIRKNLVSGSLL+K+DF+++F SDK V+SKN 
Sbjct: 315 SEIKGQGNVVLKMTSGKELTLNNVLYVPDIRKNLVSGSLLNKHDFRIIFESDKVVVSKNG 374

Query: 130 MYIGKDYLSDGLFKSNVFIVVPKI 153
           MY+G+ Y+SDGLFK NV  + PK+
Sbjct: 375 MYVGRGYVSDGLFKLNVMAIKPKV 398

[Close]
BLAST of CsaV3_7G000610 vs. NCBI nr
Match: KZV28130.1 (hypothetical protein F511_31738 [Dorcoceras hygrometricum])

HSP 1 Score: 193.7 bits (491), Expect = 6.0e-46
Identity = 90/144 (62.50%), Postives = 121/144 (84.03%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSST 69
           DV+NI+LCAV+SE N++  N +EWW+DTGATRH+C++K MF +     +G +L+MGNS+T
Sbjct: 294 DVSNINLCAVVSEVNLIGSNPREWWIDTGATRHVCSDKKMFATLKESENGEKLYMGNSAT 353

Query: 70  SKVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNE 129
           S+++GQ KV+LKMTS KELTLNNVL+VPDIRKNL+SGSLL+K+ F++VF SDK V+SKN 
Sbjct: 354 SEIKGQGKVVLKMTSGKELTLNNVLYVPDIRKNLISGSLLNKHGFRIVFESDKVVVSKNG 413

Query: 130 MYIGKDYLSDGLFKSNVFIVVPKI 153
           MY+G+ Y+SDGLFK NV  + PK+
Sbjct: 414 MYVGRGYVSDGLFKLNVKAIKPKV 437

[Close]
BLAST of CsaV3_7G000610 vs. NCBI nr
Match: XP_019231786.1 (PREDICTED: uncharacterized protein LOC109212591 [Nicotiana attenuata])

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 88/134 (65.67%), Postives = 111/134 (82.84%), Query Frame = 0 

Query: 15  DLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQ 74
           DLCA++SECN+V N +EWW+D+GATRH+CANK++FTSY P      +FM NS+T+K+EG 
Sbjct: 440 DLCAMLSECNLVGNPREWWIDSGATRHVCANKELFTSYAPAGPNGTVFMVNSATAKIEGT 499

Query: 75  DKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYIGKD 134
           DK+ LKMTS K +TL +VLHVP++RKNLVS SLL KNDFK VFVSDK V+SKNEMY+GK 
Sbjct: 500 DKIALKMTSRKIVTLKDVLHVPEMRKNLVSTSLLVKNDFKCVFVSDKVVVSKNEMYVGKG 559

Query: 135 YLSDGLFKSNVFIV 149
           YL++GLFK NV  +
Sbjct: 560 YLTEGLFKLNVIAI 573

[Close]
BLAST of CsaV3_7G000610 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.8e-13
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 0 

Query: 31  EWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQDKVILKMTSSKELTLN 90
           EW VDT A+ H    +D+F  YV    G  + MGN+S SK+ G   + +K      L L 
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFGT-VKMGNTSYSKIAGIGDICIKTNVGCTLVLK 352

Query: 91  NVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYIGKDYLSDGLFKSNVFI 148
           +V HVPD+R NL+SG  L ++ ++  F + K+ L+K  + I K      L+++N  I
Sbjct: 353 DVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEI 408

[Close]
BLAST of CsaV3_7G000610 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 0 

Query: 28  NSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQDKVILKMTSSKEL 87
           N+  W +D+GAT HI ++ +  + + P + G  + + + ST  +       L  TSS+ L
Sbjct: 306 NANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP-TSSRSL 365

Query: 88  TLNNVLHVPDIRKNLVS 105
            LN VL+VP+I KNL+S
Sbjct: 366 DLNKVLYVPNIHKNLIS 381

[Close]
BLAST of CsaV3_7G000610 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.3e-06
Identity = 26/77 (33.77%), Postives = 45/77 (58.44%), Query Frame = 0 

Query: 28  NSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKVEGQDKVILKMTSSKEL 87
           +S  W +D+GAT HI ++ +  + + P + G  + + + ST  +       L  T S+ L
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLS-TKSRPL 386

Query: 88  TLNNVLHVPDIRKNLVS 105
            L+N+L+VP+I KNL+S
Sbjct: 387 NLHNILYVPNIHKNLIS 402

[Close]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match: tr|A5B994|A5B994_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023328 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 108/140 (77.14%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 12  ANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTSKV 71
           AN++L AV+SECN+V N+KEWWVDTGATRHIC+NK MF++Y PV    +LFMG SS+SKV
Sbjct: 217 ANMNLSAVVSECNIVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKV 276

Query: 72  EGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEMYI 131
           EG+ KVILKMTS KELTLN+VLHVPDIRKNLVS SLLSKN FKLVFVSDKFVL+KNEM++
Sbjct: 277 EGRGKVILKMTSGKELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKNEMFV 336

Query: 132 GKDYLSDGLFKSNVFIVVPK 152
           GK YLSDGLFK NV  VVPK
Sbjct: 337 GKGYLSDGLFKMNVMTVVPK 356

[Close]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match: tr|A0A2N9FDD9|A0A2N9FDD9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16769 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 100/136 (73.53%), Postives = 120/136 (88.24%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTS 69
           DV+NI+L AV+SE N+V ++KEWWVDTGATRHIC++K+MF++Y  V  G QLFMGNSST+
Sbjct: 305 DVSNINLSAVVSEVNLVGDTKEWWVDTGATRHICSDKNMFSTYHSVEHGEQLFMGNSSTA 364

Query: 70  KVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEM 129
           +VEG+ KVILKMTS KELTLN+VLHVPDIRKNLVSGSLLSKN FKLVF SDKF+L+K+  
Sbjct: 365 RVEGKGKVILKMTSGKELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGT 424

Query: 130 YIGKDYLSDGLFKSNV 146
           Y+GK YLS+GLFK NV
Sbjct: 425 YVGKGYLSNGLFKMNV 440

[Close]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match: tr|A0A2N9FN92|A0A2N9FN92_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16505 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 99/136 (72.79%), Postives = 120/136 (88.24%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTS 69
           DV++I+L AV+SE N+V ++KEWWVDTGATRHIC++K MF++Y  V  G QLFMGNSST+
Sbjct: 283 DVSDINLSAVVSEVNLVGDTKEWWVDTGATRHICSDKKMFSTYHSVEHGEQLFMGNSSTA 342

Query: 70  KVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEM 129
           +VEG+ KVILKMTS KELTLN+VLHVPDIRKNLVSGSLLSKN FKLVF SDKF+L+K+ +
Sbjct: 343 RVEGKGKVILKMTSGKELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGI 402

Query: 130 YIGKDYLSDGLFKSNV 146
           Y+GK YLS+GLFK NV
Sbjct: 403 YVGKGYLSNGLFKMNV 418

[Close]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match: tr|A0A2N9H4X9|A0A2N9H4X9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34551 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 99/136 (72.79%), Postives = 120/136 (88.24%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTS 69
           DV++I+L AV+SE N+V ++KEWWVDTGATRHIC++K MF++Y  V  G QLFMGNSST+
Sbjct: 305 DVSDINLSAVVSEVNLVGDTKEWWVDTGATRHICSDKKMFSTYHSVEHGEQLFMGNSSTA 364

Query: 70  KVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEM 129
           +VEG+ KVILKMTS KELTLN+VLHVPDIRKNLVSGSLLSKN FKLVF SDKF+L+K+ +
Sbjct: 365 RVEGKGKVILKMTSGKELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGI 424

Query: 130 YIGKDYLSDGLFKSNV 146
           Y+GK YLS+GLFK NV
Sbjct: 425 YVGKGYLSNGLFKMNV 440

[Close]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match: tr|A0A2N9HII5|A0A2N9HII5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24768 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 99/136 (72.79%), Postives = 119/136 (87.50%), Query Frame = 0 

Query: 10  DVANIDLCAVISECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVSSGAQLFMGNSSTS 69
           DV++I+L AV+SE N+V ++KEWWVDTGATRHIC++K+MF+ Y  V  G QLFMGNSST+
Sbjct: 305 DVSDINLSAVVSEVNLVGDTKEWWVDTGATRHICSDKNMFSKYHSVEHGEQLFMGNSSTA 364

Query: 70  KVEGQDKVILKMTSSKELTLNNVLHVPDIRKNLVSGSLLSKNDFKLVFVSDKFVLSKNEM 129
           +VEG+ KVILKMTS KELTLN+VLHVPDIRKNLVSGSLLSKN FKLVF SDKF+L+K+  
Sbjct: 365 RVEGKGKVILKMTSGKELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGT 424

Query: 130 YIGKDYLSDGLFKSNV 146
           Y+GK YLS+GLFK NV
Sbjct: 425 YVGKGYLSNGLFKMNV 440

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000610 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN82978.11.8e-5377.14hypothetical protein VITISV_023328 [Vitis vinifera][more]
CAN66576.13.8e-4879.03hypothetical protein VITISV_016964 [Vitis vinifera][more]
KZV23636.12.7e-4662.50hypothetical protein F511_34337 [Dorcoceras hygrometricum][more]
KZV28130.16.0e-4662.50hypothetical protein F511_31738 [Dorcoceras hygrometricum][more]
XP_019231786.11.3e-4565.67PREDICTED: uncharacterized protein LOC109212591 [Nicotiana attenuata][more]
BLAST of CsaV3_7G000610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P10978|POLX_TOBAC7.8e-1335.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
sp|Q9ZT94|POLR2_ARATH3.2e-0636.36Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
sp|Q94HW2|POLR1_ARATH9.3e-0633.77Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_7G000610 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5B994|A5B994_VITVI1.2e-5377.14Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023328 PE=4 SV=1[more]
tr|A0A2N9FDD9|A0A2N9FDD9_FAGSY2.3e-4973.53Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16769 PE=4 SV=1[more]
tr|A0A2N9FN92|A0A2N9FN92_FAGSY8.6e-4972.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16505 PE=4 SV=1[more]
tr|A0A2N9H4X9|A0A2N9H4X9_FAGSY8.6e-4972.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34551 PE=4 SV=1[more]
tr|A0A2N9HII5|A0A2N9HII5_FAGSY1.1e-4872.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24768 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000610.1CsaV3_7G000610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF234SUBFAMILY NOT NAMEDcoord: 23..144
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 23..144

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000610Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000610Cucumber (Chinese Long) v3cuccucB101
CsaV3_7G000610Silver-seed gourdcarcucB0347
CsaV3_7G000610Silver-seed gourdcarcucB1026
CsaV3_7G000610Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000610Cucumber (Gy14) v2cgybcucB095
CsaV3_7G000610Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000610Cucumber (Gy14) v1cgycucB257
CsaV3_7G000610Cucumber (Gy14) v1cgycucB580
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0231
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000610Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000610Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G000610Cucurbita moschata (Rifu)cmocucB0219
CsaV3_7G000610Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000610Cucurbita moschata (Rifu)cmocucB0948
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB0368
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB0947
CsaV3_7G000610Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000610Wild cucumber (PI 183967)cpicucB119
CsaV3_7G000610Wild cucumber (PI 183967)cpicucB415
CsaV3_7G000610Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000610Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000610Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000610Melon (DHL92) v3.5.1cucmeB568
CsaV3_7G000610Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000610Melon (DHL92) v3.6.1cucmedB554
CsaV3_7G000610Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000610Watermelon (Charleston Gray)cucwcgB599
CsaV3_7G000610Watermelon (97103) v1cucwmB604
CsaV3_7G000610Watermelon (97103) v1cucwmB634
CsaV3_7G000610Watermelon (97103) v2cucwmbB539
CsaV3_7G000610Watermelon (97103) v2cucwmbB549
CsaV3_7G000610Watermelon (97103) v2cucwmbB578
CsaV3_7G000610Wax gourdcucwgoB695
CsaV3_7G000610Wax gourdcucwgoB706