CsaV3_7G000480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000480
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 550679 .. 551014 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAAAGAATATAGGCGAGGTAGGAGTGAGAAAAGGATAGGATTTAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAAATTTGAAAAGGGAGAGGGGGAAAAATGGAGGATGATGAGAAGAAAGAGAGGAAGTTGGAATGGAGGAAAGGAAAACTTACAACAACAGATGCAATGGAGAAGAAGGAATGCTGACCTGAAAAGAATTTGGAAGAGATTTGGTGAAGATTTGATAGAGTCGGAGATTGAAGAGAGAACTGAGAGAGAAAGAATGGTGGTGAGTAGCAAGCCTACTTCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCGTTTTGA

mRNA sequence

ATGGAGGAAAAAGAATATAGGCGAGGTAGGAGTGAGAAAAGGATAGGATTTAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAAATTTGAAAAGGGAGAGGGGGAAAAATGGAGGATGATGAGAAGAAAGAGAGGAAGTTGGAATGGAGGAAAGGAAAACTTACAACAACAGATGCAATGGAGAAGAAGGAATGCTGACCTGAAAAGAATTTGGAAGAGATTTGGTGAAGATTTGATAGAGTCGGAGATTGAAGAGAGAACTGAGAGAGAAAGAATGGTGGTGAGTAGCAAGCCTACTTCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCGTTTTGA

Coding sequence (CDS)

ATGGAGGAAAAAGAATATAGGCGAGGTAGGAGTGAGAAAAGGATAGGATTTAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAAATTTGAAAAGGGAGAGGGGGAAAAATGGAGGATGATGAGAAGAAAGAGAGGAAGTTGGAATGGAGGAAAGGAAAACTTACAACAACAGATGCAATGGAGAAGAAGGAATGCTGACCTGAAAAGAATTTGGAAGAGATTTGGTGAAGATTTGATAGAGTCGGAGATTGAAGAGAGAACTGAGAGAGAAAGAATGGTGGTGAGTAGCAAGCCTACTTCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCGTTTTGA

Protein sequence

MEEKEYRRGRSEKRIGFRRRRRRRRRKKFEKGEGEKWRMMRRKRGSWNGGKENLQQQMQWRRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF
Homology
[Close]
BLAST of CsaV3_7G000480 vs. NCBI nr
Match: KGN43187.1 (hypothetical protein Csa_7G007850 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW 60
           MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW
Sbjct: 1   MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW 60

Query: 61  RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF 112
           RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF
Sbjct: 61  RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF 111

[Close]
BLAST of CsaV3_7G000480 vs. TrEMBL
Match: tr|A0A0A0K4H6|A0A0A0K4H6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007850 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.4e-42
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW 60
           MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW
Sbjct: 1   MEEKEYRRGRSEKRIGFRXXXXXXXXXXXXXXXXXXWRMMRRKRGSWNGGKENLQQQMQW 60

Query: 61  RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF 112
           RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF
Sbjct: 61  RRRNADLKRIWKRFGEDLIESEIEERTERERMVVSSKPTSFLPSFLPSSSF 111

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43187.11.4e-41100.00hypothetical protein Csa_7G007850 [Cucumis sativus][more]
BLAST of CsaV3_7G000480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4H6|A0A0A0K4H6_CUCSA9.4e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007850 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000480.1CsaV3_7G000480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000480Watermelon (97103) v2cucwmbB539
CsaV3_7G000480Watermelon (97103) v2cucwmbB549
CsaV3_7G000480Watermelon (97103) v2cucwmbB578
CsaV3_7G000480Wax gourdcucwgoB695
CsaV3_7G000480Wax gourdcucwgoB701
CsaV3_7G000480Wax gourdcucwgoB706
CsaV3_7G000480Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000480Cucumber (Chinese Long) v3cuccucB101
CsaV3_7G000480Silver-seed gourdcarcucB0244
CsaV3_7G000480Silver-seed gourdcarcucB0347
CsaV3_7G000480Silver-seed gourdcarcucB1026
CsaV3_7G000480Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000480Cucumber (Gy14) v2cgybcucB095
CsaV3_7G000480Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000480Cucumber (Gy14) v1cgycucB257
CsaV3_7G000480Cucumber (Gy14) v1cgycucB580
CsaV3_7G000480Cucurbita maxima (Rimu)cmacucB0177
CsaV3_7G000480Cucurbita maxima (Rimu)cmacucB0231
CsaV3_7G000480Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000480Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000480Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000480Cucurbita moschata (Rifu)cmocucB0161
CsaV3_7G000480Cucurbita moschata (Rifu)cmocucB0219
CsaV3_7G000480Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000480Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000480Cucurbita moschata (Rifu)cmocucB0948
CsaV3_7G000480Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000480Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000480Cucurbita pepo (Zucchini)cpecucB0869
CsaV3_7G000480Cucurbita pepo (Zucchini)cpecucB0947
CsaV3_7G000480Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000480Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000480Wild cucumber (PI 183967)cpicucB119
CsaV3_7G000480Wild cucumber (PI 183967)cpicucB415
CsaV3_7G000480Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000480Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000480Bottle gourd (USVL1VR-Ls)cuclsiB570
CsaV3_7G000480Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000480Melon (DHL92) v3.5.1cucmeB568
CsaV3_7G000480Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000480Melon (DHL92) v3.6.1cucmedB554
CsaV3_7G000480Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000480Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000480Watermelon (Charleston Gray)cucwcgB599
CsaV3_7G000480Watermelon (97103) v1cucwmB604
CsaV3_7G000480Watermelon (97103) v1cucwmB634
CsaV3_7G000480Watermelon (97103) v1cucwmB640